Sequence
atgc intronic sequence ATGC exonic sequenceAGCTGGGGGATGGAAGGATAGGACAACAGTGGAGGATATGGATCTGGCAGTGAGGGCTAGTCTCAAAGGCTGGAAATTTGTCTACCTTGGTACTCTCAAGgtatatgcatatgttataatacttctgtgcttaaggcttcccaatttttgaatttattttctcggactgattgatgtctctttagaatcttgttttgttgatgtttcattatttgactttaaatttttcgatag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0007g03990.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA19G37480.1 (Glycine max), 5'ss of exon 5
AGCTGGGGGATGGAAGGATAGGACAACAGTGGAGGATATGGATCTGGCAGTGAGGGCTAGTCTCAAAGGCTGGAAATTTGTCTACCTTGGTACTCTCAAGgtatatgcatatgttataatacttctgtgcttaaggcttcccaatttttgaatttattttctcggactgattgatgtctctttagaatcttgttttgttgatgtttcattatttgactttaaatttttcgatag
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GGCTGGTGGATGGAAGGATAGGACCACAGTGGAAGATATGGACTTGGCCGTGCGAGCCAGTCTCAAAGGATGGAAATTCTTATACTTGTCTGACTTGAAGgt--------------------tcgctttcttcaaacttt---gttattatatttcatttgatgatttgaattaaagtatcttggaaacttactttctta---ctttataaaatatctttaagtta--------
upper sequence: Vv08s0007g03990.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA03G34800.1 (Glycine max), 5'ss of exon 5
AGCTGGGGGATGGAAGGATAGGACAACAGTGGAGGATATGGATCTGGCAGTGAGGGCTAGTCTCAAAGGCTGGAAATTTGTCTACCTTGGTACTCTCAAGgtatatgcatatgttataatacttctgtgcttaaggcttcccaatttttgaatttattttctcggactga-ttgatgtctctttagaatcttgttttgttgatgtttcattatttgactttaaatttttcgatag
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GGCTGGTGGATGGAAGGATAGAACCACAGTGGAAGATATGGACTTGGCTGTGCGAGCCAGTCTCAAAGGATGGAAATTCTTATAC-TTGTCAGACTTGAAG-Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|34543461|gb|CF511693.1|CF511693EST: TGAGGGCTAGTCTCAAAGGCTGGAAATTTGTCTACCTTGGTACTCTCAAG GTTAAAAATGAGTTGCCTAGTACCTTTAAAGCCTACCGCTACCAACAGCAT
genomic: TGAGGGCTAGTCTCAAAGGCTGGAAATTTGTCTACCTTGGTACTCTCAAGgtatatgcat ... ttttcgatagGTTAAAAATGAGTTGCCTAGTACCTTTAAAGCCTACCGCTACCAACAGCAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGCTGGGGGATGGAAGGATAGGACAACAGTGGAGGATATGGATCTGGCAGTGAGGGCTAGTCTCAAAGGCTGGAAATTTGTCTACCTTGGTACTCTCAAGgtatatgcatatgttataatacttctgtgcttaaggcttcccaatttttgaatttattttctcggactgattgatgtctctttagaatcttgttttgttgatgtttcattatttgactttaaatttttcgatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA