1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CAGAGGCTTGTTTAGAGTTGTGCAAAGAAGTGGGCGTGAAGGCTATTGATCTTTGGACTGCAATTCAGCAACAGGATGATTGGTTAAATGTTTGCTTCACgtaagtttaccttagtccctccaactcaagaaaataactctcctttaaaagcctctaatatcatagatattaaaaacttaccatacatgatctactacaa...
species | Vitis vinifera |
transcript | Vv08s0007g02260.t01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CTTTGGACTGCAATTCAGCAACGGGATGATTGGTTAAATGTTTGCTTCAC GGACGGCATCCATTTGTCAAGTGAAGGGAGCAAGGTAGTAGTGAAGGAGATEST: gi|30320763|gb|CD004025.1|CD004025
genomic: CTTTGGACTGCAATTCAGCAACAGGATGATTGGTTAAATGTTTGCTTCACgtaagtttac ... atgtgtgcagGGACGGCATCCATTTGTCAAGTGAAGGGAGCAAGGTAGTAGTGAAGGAGAT
EST: CTTTGGACTGCAATTCAGCAACAGGATGATTGGTTAAATGTTTGCTTCAC GGACGGCATCCATTTGTCAAGTGAAGGGAGCAAGGTAGTAGTGAAGGAGATEST: gi|18459421|gb|BM437699.1|BM437699
genomic: CTTTGGACTGCAATTCAGCAACAGGATGATTGGTTAAATGTTTGCTTCACgtaagtttac ... atgtgtgcagGGACGGCATCCATTTGTCAAGTGAAGGGAGCAAGGTAGTAGTGAAGGAGAT
EST: CTTTGGACTGCAATTCAGCAACAGGATGATTGGTTAAATGTTTGCTTCAC GGACGGCATCCATTTGTCAAGTGAAGGGAGCAAGGTAGTAGTGAAGGAGAT
genomic: CTTTGGACTGCAATTCAGCAACAGGATGATTGGTTAAATGTTTGCTTCACgtaagtttac ... atgtgtgcagGGACGGCATCCATTTGTCAAGTGAAGGGAGCAAGGTAGTAGTGAAGGAGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAGAGGCTTGTTTAGAGTTGTGCAAAGAAGTGGGCGTGAAGGCTATTGATCTTTGGACTGCAATTCAGCAACAGGATGATTGGTTAAATGTTTGCTTCACgtaagtttaccttagtccctccaactcaagaaaataactctcctttaaaagcctctaatatcatagatattaaaaacttaccatacatgatctactacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tccctcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aagaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctctcct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - attaaaa