Sequence
atgc intronic sequence ATGC exonic sequenceACCCTCCTTTCACAACTACCGTATTTGGTCTTTTCTGGGTCTTGGCATGACCACCTACACAGCATGGTACTTGGCCATCGCAGCTCTAATTCACGGACAGgtattactcatcaaccatcatcatctttctagggtttatttctctgaatcagtgtttgaggttatggtgctgattttctatattgcagtgagtaaagttttgtgcgggtgtttttttttttttgttttttttatag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0007g02030.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA18G42640.1 (Glycine max), 5'ss of exon 5
ACCCTCCTTTCACAACTACCGTATTTGGTCTTTTCTGGGTCTTGGCATGACCACCTACACAGCATGGTACTTGGCCATCGCAGCTCTAATTCACGGACAGgtattactcatcaaccatcat-catctttcta-gggtttatttc---tctgaatcagtgtttgaggttatggtgctgattttctatattgcagtgagtaaagttttgtgcgggtgtttttttttttttgttttttttatag
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ACCCTCCTTTCACAATTACCGTATTTGGTCTTTTCTGGGACTTGGAATGACCACTTACACTGCTTGGTACTTGGCTATTGCAGCTCTTATTCATGGCCAGgta--aatcggtaattttgaagcataaatttataagtctatctaaaatctaaaatattattagagtttatgga--taatatacttagggtcatccaatcacatg-------------------------------------
upper sequence: Vv08s0007g02030.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA07G17810.1 (Glycine max), 5'ss of exon 6
ACCCTCCTTTCACAACTACCGTATTTGGTCTTTTCTGGGTCTTGGCATGACCACCTACACAGCATGGTACTTGGCCATCGCAGCTCTAATTCACGGACAGgtattactcatcaaccatcatcatctttctagggtttatttctctgaatcagtgtt-tgaggttatggtgctgattttctatattgcagtgagtaaagtt-ttgtgcgggtgtttttttttttttgttttttttatag
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ACCTTCTTTTCACAATTACCGTATTTGGTCTTTTCTGGGACTTGGAATGACCACTTACACTGCTTGGTACTTGGCAATAGCAGCCCTTATTCATGGCCAGgta--aatcgttaa---ttctgaaccatccaattacaaattatacaaattattgttatataatttttaaagaaattatc---ataaatgtcaataaaattattatatt------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110685103|gb|EE063138.1|EE063138EST: CCACCTACACAGCATGGTACTTGGCCATCGCAGCTCTAATTCACGGACAG TCTGAAGGAGTGGAACACTCAGCTCCCACGAAGCTAGTGCTGTATTTTACT
genomic: CCACCTACACAGCATGGTACTTGGCCATCGCAGCTCTAATTCACGGACAGgtattactca ... ttttttatagTCTGAAGGAGTGGCACACTCAGCTCCAACAAAGCTAGTGCTGTATTTTACT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ACCCTCCTTTCACAACTACCGTATTTGGTCTTTTCTGGGTCTTGGCATGACCACCTACACAGCATGGTACTTGGCCATCGCAGCTCTAATTCACGGACAGgtattactcatcaaccatcatcatctttctagggtttatttctctgaatcagtgtttgaggttatggtgctgattttctatattgcagtgagtaaagttttgtgcgggtgtttttttttttttgttttttttatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC