Sequence
atgc intronic sequence ATGC exonic sequenceGAACCATAGATGGTAGAAGGTACATGTTCATGGGCCATCAAAAGGGTAGAAACACAAAAGAGAATGTCCAACGTAACTTTGGGATGCCTACTCCTCATGGgtatgttgttaggatggagaatttgttattactgatatgcacctgaatatgataaagaaatccttatgctattgcgacatctatgatctcattagctttggaaatggataggcagttccttctcattggcagtgctaaccccagaaggagaaatttagtatgtaatgctaaacaataatttttctgttgaaacag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0007g01750.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA18G42280.1 (Glycine max), 5'ss of exon 4
GAACCATAGATGGTAGAAGGTACATGTTCATGGGCCATCAAAAGGGTAGAAACACAAAAGAGAATGTCCAACGTAACTTTGGGATGCCTACTCCTCATGGgtatgttgttaggatggagaatttg-ttattactgatatgcacctgaatatgataaagaaatccttatgctattgcgacatctatgatctcattagctttggaaatggataggcagttccttctcattggcagtgctaaccccagaaggagaaatttagtatgtaatgctaaacaataatttttctgttgaaacag
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GGACTATAGATGGTAGAAGCTACATGTTCATTGGTCACCAAAAGGGTAGAAATACTAAAGAAAATATTCAGCGTAACTTTGGGATGCCAACTCCTCATGGgtatgttga-aggatagaaactctaattaacattgattt-tatctgcatttgactttcatgtaaatttccaattcaaacag-------------------------------------------------------------------------------------------------------------------
upper sequence: Vv08s0007g01750.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA18G42300.1 (Glycine max), 5'ss of exon 4
GAACCATAGATGGTAGAAGGTACATGTTCATGGGCCATCAAAAGGGTAGAAACACAAAAGAGAATGTCCAACGTAACTTTGGGATGCCTACTCCTCATGGgtatgttgttaggatggagaatttgttattact-gatatgcacctgaatatgataaagaaatccttatgctattgcgacatctatgatctcattagctttggaaatggataggcagttccttctcattggcagtgctaaccccagaaggagaaatttagtatgtaatgctaaacaataatttttctgttgaaacag
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GGACTATAGATGGTAGAAGCTACATGTTCATCGGTCACCAAAAGGGTAGAAATACTAAAGAAAACATTCAGCGTAACTTTGGGATGCCAACTCCTCATGGgtatgttgacgag---gaactttagttgatacaagatattgac-tagatttaagatagga-tagaaactctaat-taacattgat----ttatctgcatttgacactgatggtaaattttcaatt-caaacag---------------------------------------------------------------
upper sequence: Vv08s0007g01750.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA18G42310.2 (Glycine max), 5'ss of exon 4
GAACCATAGATGGTAGAAGGTACATGTTCATGGGCCATCAAAAGGGTAGAAACACAAAAGAGAATGTCCAACGTAACTTTGGGATGCCTACTCCTCATGGgtatgttgttaggatggagaatttgttattactgatatgcacctgaatatgataaagaaatccttatgctattgcgacatctatgatctcattagctttggaaatggataggcagttccttctcattggcagtgctaaccccagaaggagaaatttagtatgtaatgctaaacaataatttttctgttgaaacag
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GGACTATAGATGGTAGAAGCTACATGTTCATCGGTCACCAAAAGGGTAGAAATACTAAAGAAAACATTCAGCGTAACTTTGGGATGCCAACTCCTCATGGgtatgttgacgag---gaactctagttgatacaagaaattgactagatttaagatagga-tagaaactctaat-taacat---tgattttatctgcatttgacactgatggtaaattttcaatt-caaacag---------------------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|122689389|gb|EC938332.1|EC938332EST: AACACAAAAGAGAATGTCCAACGTAACTTTGGGATGCCTACTCCTCATGG TTATCGGAAGGCTCTACGGATGATGTACTATGCAGATCACCATGGATTTCC
genomic: AACACAAAAGAGAATGTCCAACGTAACTTTGGGATGCCTACTCCTCATGGgtatgttgtt ... gttgaaacagTTATCGGAAGGCTCTACGGATGATGTACTATGCAGATCACCATGGATTTCC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GAACCATAGATGGTAGAAGGTACATGTTCATGGGCCATCAAAAGGGTAGAAACACAAAAGAGAATGTCCAACGTAACTTTGGGATGCCTACTCCTCATGGgtatgttgttaggatggagaatttgttattactgatatgcacctgaatatgataaagaaatccttatgctattgcgacatctatgatctcattagctttggaaatggataggcagttccttctcattggcagtgctaaccccagaaggagaaatttagtatgtaatgctaaacaataatttttctgttgaaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC