Sequence
atgc intronic sequence ATGC exonic sequenceGATGAAACTTTTTTGGCATCACCCTGTCTTGTAACTTTGGGTCCTGGAGTGAGGATATCCACCATTGCTGCTGGTGGGCGCCACACTTTAGCACTGTCAGgtaaattctccatcccctgggtcactgcagcccacacaagccacagttttcaggtgtagcaatttcttctttgtggttacactatatagttttgtaggtcatttgaagtacgaagctatggaagatctttaatgtaaagcaagacacctaatttaacaaaagtttcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0007g00930.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA18G40600.1 (Glycine max), 5'ss of exon 7
GATGAAACTTTTTTGGCATCACCCTGTCTTGTAACTTTGGGTCCTGGAGTGAGGATATCCACCATTGCTGCTGGTGGGCGCCACACTTTAGCACTGTCAGgtaaattctccatcccctgggtcactgcagcccacacaagccacagttttcaggtgtagcaatttcttctttgtggttacactatatagttttgtaggtcatttgaagtacgaagctatggaagatctttaatgtaaagcaagacacctaatttaacaaaagttt-cag---
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-----------------------------------------------------------------------------------------------------------------------------TGTACTATA-ATGATTCCGAGAATCTAGGGATAgttggctctt----gtggttacattatgtagttttgtaggttcaatgaagtatgaagatatggaaggtttttgatgtaaagcaagacacctgatgcatcatatttttaccgaag
upper sequence: Vv08s0007g00930.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA07G16400.1 (Glycine max), 5'ss of exon 6
GATGAAACTTTTTTGGCATCACCCTGTCTTGTAACTTTGGGTCCTGGAGTGAGGATATCCACCATTGCTGCTGGTGGGCGCCACACTTTAGCACTGTCAGgtaaattctccatcccctgggtcactgcagcccacacaagccacagttttcaggtgtagcaatttcttctttgtggttacactatatagttttgtaggtcatttgaagtacgaagctatggaagatctttaatgtaaagcaagacacctaatttaacaaaagttt--cag--
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------------------------------------------------------------------------------------------------------------------------TTTACTATA------ATGATTCTGAGAATCTAGGGATAgttgcctctt----gtggttacattatatagttttgtaggttcaatgaagtatgaagataaggatggtttttgatgtaaagcaagacacctgatgcatcatatttttaccaaagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110373916|gb|EC938364.1|EC938364EST: GAGGATATCCACCGTTGCTGCTGGTGGGCGCCACACTTTAGCACTGTCAG ATATGGGACAGGTGTGGGGTTGGGGCTATGGAGGCGAAGGGCAGCTAGGTT
genomic: GAGGATATCCACCATTGCTGCTGGTGGGCGCCACACTTTAGCACTGTCAGgtaaattctc ... aaagtttcagATATGGGACAGGTGTGGGGTTGGGGCTATGGAGGCGAAGGGCAGCTAGGTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GATGAAACTTTTTTGGCATCACCCTGTCTTGTAACTTTGGGTCCTGGAGTGAGGATATCCACCATTGCTGCTGGTGGGCGCCACACTTTAGCACTGTCAGgtaaattctccatcccctgggtcactgcagcccacacaagccacagttttcaggtgtagcaatttcttctttgtggttacactatatagttttgtaggtcatttgaagtacgaagctatggaagatctttaatgtaaagcaagacacctaatttaacaaaagtttcag
- - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG