Sequence
atgc intronic sequence ATGC exonic sequenceGCGAGGGGTTGATGCAAATGATCGCTGTTCTTGGTGCCATTATTTGTCCTGCGTCCCTACTTCAAAATGGAGCTGCAAGACAGAGCCTGCATACTGTCTGgtaactaatgctgacacttccttttttccttcatgtacatgtcaagatgttagtcccctcctttcaaagctaaaccgatatttttaaacctggatagcct...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0007g00470.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G100889_T01 (Zea mays), 5'ss of exon 5
GCGAGGGGTTGATGCAAATGATCGCTGTTCTTGGTGCCATTATTTGTCCTGCGTCCCTACTTCAAAATGGAGCTGCAAGACAGAGCCTGCATACTGTCTGgtaactaatgctgacacttccttttttccttcatgtacatg------tcaagatgttagtcccctcctttcaaagctaaaccgatatttttaaacctggatagcct
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TCAAGGGTTCAATGCTAGTGAGCACTGTTCTTGGTGCCATTATATGAGCTGTGTGCCTACTTCAAAGTGGAGTTGCAACGCACCAAATAACTACTGTATGgtatgtttttctgtagttatgattcttactaaatgtacttaatggctttgatggggtaatcaccagttcctatatttttaac----ctgtcaagtcaggataaa--
upper sequence: Vv08s0007g00470.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA03G13780.1 (Glycine max), 5'ss of exon 5
GCGAGGGGTTGATGCAAATGATCGCTGTTCTTGGTGCCATTATTTGTCCTGCGTCCCTACTTCAAAATGGAGCTGCAAGACAGAGCCTGCATACTGTCTGgtaactaatgctgacacttccttttttccttcatgtacatgtcaagatgttagtcccct---cctttcaaagctaaaccgatatttttaaacctggatagcct
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CCAAGGTGTTGATGCAAATGATCACTGTTCCTGGTGCCATTATCTGTCTTGTGTTCCAACTTCAAAATGGAGCTGCCATACAGAGGCAGCATATTGTCAGgtaagcatttttt-tacctgaaagcctc-ttcatatgaataatattat-cagatcctctgaaattacttatgtttcaccgacatttttatgaatgggttatct
upper sequence: Vv08s0007g00470.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA18G25760.1 (Glycine max), 5'ss of exon 5
GCGAGGGGTTGATGCAAATGATCGCTGTTCTTGGTGCCATTATTTGTCCTGCGTCCCTACTTCAAAATGGAGCTGCAAGACAGAGCCTGCATACTGTCTGgtaactaatgctgacacttccttttttccttcatgtacatgtcaagatgttagtcccctcctttcaaagctaaaccgatatttttaaacctggatagcct---
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CCGTGGTGTTGATGCAAATGATCACTGCTCCTGGTGCCATTATCTGTCTTGCGTTCCAACTTCAAAATGGAGCTGCCATACAGAGGCAGCATATTGCGAGgtaagcattttacctgaaagcctcttcatatgaataatattatcagatcctctgaaattactt---atttttcactgacaattttatgaatgggttatcttta
upper sequence: Vv08s0007g00470.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA18G39860.1 (Glycine max), 5'ss of exon 7
GCGAGGGGTTGATGCAAATGATCGCTGTTCTTGGTGCCATTATTTGTCCTGCGTCCCTACTTCAAAATGGAGCTGCAA---GACAGAGCCTGCATACTGTCTGgtaactaatgctgacacttccttttttccttcatgtacatgtcaagatgttagtcccctcctttcaaagctaaaccgatatttttaaacctg--gatagcct-------
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------TATTGATGCAAATGATTACTGCTCCTGGTGCCATTATCTGTCTTGTGTTCCAACTTCAAGATGGAACTGCAATCCACCAAAATCTTCATCTTGTGTTGTGgtaagcatttgtgctgaaatatgttcatc-tgaat-tgtca----gttagtaaggaattaggagagaaaaaacaacaatgttcatcatgatgttatcctttaacttMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|22011803|gb|BQ796837.1|BQ796837EST: GCGTCCCTACTTCAAAATGGAGCTGCAAGACAGAGCCTGCATACTGTCTG TCCAACCAGATAGGCAACCAACTCAACCTGACATGCTCGAGCAATGGTAAG
genomic: GCGTCCCTACTTCAAAATGGAGCTGCAAGACAGAGCCTGCATACTGTCTGgtaactaatg ... cctgttgcagTCCAACCAGATAGGCAACCAACTCAACCTGACATGCTCGAGCAATGGTAAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GCGAGGGGTTGATGCAAATGATCGCTGTTCTTGGTGCCATTATTTGTCCTGCGTCCCTACTTCAAAATGGAGCTGCAAGACAGAGCCTGCATACTGTCTGgtaactaatgctgacacttccttttttccttcatgtacatgtcaagatgttagtcccctcctttcaaagctaaaccgatatttttaaacctggatagcct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cccctcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaagctaa