Sequence
atgc intronic sequence ATGC exonic sequenceGTTGGTTGGTGTTGGTGAGGCTTCATTCGTAAGTCTTGCAGCTCCATTTATAGATGACAATGCTCCTGTCACTCAGgtttgtttgattgtgtggttttctttatttattttttaatttccctctttgactttacaggattctatgtttattgtagttatttgctgtccagtacaat...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0205g00120.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: LOC_Os04g44430.1 (Oryza sativa), 5'ss of exon 4
GTTGGTTGGTGTTGGTGAGGCTTCATTCGTAAGTCTTGCAGCTCCATTTATAGATGACAATGCTCCTGTCACTCAGgtttgtttgattgtgtggttttcttt---atttattttttaatttccctctttgactttacaggattctatgtttattgtagttatttgctgtccagtacaat
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GTTAGTTGGTGTTGGTGAAGCATCATTTATAAGTCTTGCAGCTCCATTCATTGATGATAATGCTCCAGCAGCACAGgttc-tgtcattcttagaatgcctttacaatctttctctgcactgagctgatatattatgttcaaacaaatcttatttttacacagtattgtttctgtgct--
upper sequence: Vv07s0205g00120.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G164743_T01 (Zea mays), 5'ss of exon 5
GTTGGTTGGTGTTGGTGAGGCTTCATTCGTAAGTCTTGCAGCTCCATTTATAGATGACAATGCTCCTGTCACTCAGgtttgtttgattgtgtggttttctttatttatttttta-atttccctctttgactttacaggattctatgtttattgta-gttatttgctgtccagtacaat-
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GTTTGTGGGCGTTGGCGAAGCTTCATTTATAAGTCTTGCAGCTCCATTTATTGATGACAATGCACCAGTAGCTCAGgttctgttgccc-tattgcccttgagatttctttaccgtaacacatccaatttctttttgaacatgtaggatagctggacattattt--tattaagaagaata
upper sequence: Vv07s0205g00120.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G062024_T01 (Zea mays), 5'ss of exon 5
GTTGGTTGGTGTTGGTGAGGCTTCATTCGTAAGTCTTGCAGCTCCATTTATAGATGACAATGCTCCTGTCACTCAGgtttgtttgattgtgtggttttctttatttattttttaatttccctctttgactttacaggattctatgtttattgtagttatttgctgtccagtacaat--
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GTTTGTTGGCGTTGGCGAAGCTTCATTTATAAGTCTCGCAGCTCCATTCATTGATGACAATGCACCGGTAGCTCAGgttatgttg-ttgcactattgctcttgtgatttctctactgtaacacatatccaatttattttttaatacgtacgagagctgcatatcattatat-caatga
upper sequence: Vv07s0205g00120.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA09G33680.1 (Glycine max), 5'ss of exon 5
GTTGGTTGGTGTTGGTGAGGCTTCATTCGTAAGTCTTGCAGCTCCATTTATAGATGACAATGCTCCTGTCACTCAGgtttgtttgattgtgtggttttctttatttattttttaatttccctctttgactttacaggattctatgtttattgtagttatttgctgtccagtacaat
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GCTAGTTGGTGTAGGTGAGGCTTCCTTCATAAGTCTTGCCGCACCATTTATAGATGACAATGCCCCTGATGCACAGgtttgatctatttcttcattcccttcataattagttgaaactgtttctccatgaatacagagttgcagcttta--atagt-attt--tatttatgacag-
upper sequence: Vv07s0205g00120.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: AT2G22730.1 (Arabidopsis thaliana), 5'ss of exon 5
GTTGGTTGGTGTTGGTGAGGCTTCATTCGTAAGTCTTGCAGCTCCATTTATAGATGACAATGCTCCTGTCACTCAGgtt--tgtttga-ttgtgtggttttctttatttattttttaatttccctctttgactttacaggattctatgtttattgtagttatttgctgtccagtacaat
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GTTCGTTGGTGTAGGTGAAGCTTCTTTCATTAGTCTTGCAGCTCCATTTATAGATGACAATGCTCCTCAAGAACAGgtctctgtttgaattttgttttgaacttcttatgaagccaaaacgcaccattatatttataaagcttgtttggtttttacag---------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|34546196|gb|CF514428.1|CF514428EST: TCGTAAGTCTTGCAGCTCCATTTATAGATGACAATGCTCCTGTCACTCAG AAAACAGCCTGGCTTGCAATGTTTTACATGTGTATACCAACTGGGATCGCT
genomic: TCGTAAGTCTTGCAGCTCCATTTATAGATGACAATGCTCCTGTCACTCAGgtttgtttga ... tgtcatgcagAAAACAGCCTGGCTTGCAATGTTTTACATGTGTATACCAACTGGGATCGCT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTTGGTTGGTGTTGGTGAGGCTTCATTCGTAAGTCTTGCAGCTCCATTTATAGATGACAATGCTCCTGTCACTCAGgtttgtttgattgtgtggttttctttatttattttttaatttccctctttgactttacaggattctatgtttattgtagttatttgctgtccagtacaat
- - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttccctc