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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGAGGGCCTCAAAGATTCGAAAGCTTTTTAACCTCTCGAAGGAGGATGATGTTCGGAAGTATGTGAACACTTATCGCCGAACTTTTACTACTAAATCTGgttggtgttctaatttcttttttgatgggaaatatgatatgtttactgacattatttactaaagatgtatgattggtcttatctgtgtgcctggcag

Basic information

species Vitis vinifera
transcript Vv07s0191g00060.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0191g00060.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA13G31130.1 (Glycine max), 5'ss of exon 6
AAGAGGGCCTCAAAGATTCGAAAGCTTTTTAACCTCTCGAAGGAGGATGATGTTCGGAAGTATGTGAACACTTATCGCCGAACTTTTACTACTAAATCTGgttggtgttctaatttcttttttgatgggaaatatgatatgtttactgacattatttactaa--agatgtatgattggtct-tatctgtgtgcctggcag---
||||| || || || || || |||||||| ||||| || ||||||||||||||  |||||||||| ||||| ||| |  |||| ||||| ||||||  ||||      |||  | ||| | |  |||    ||| || || | |  |  | |||   |  ||  | | || | |    | | || |||||  | |  | |   
AAGAGAGCTTCCAAAATCCGCAAGCTTTTCAACCTGTCTAAGGAGGATGATGTGAGGAAGTATGTCAACACCTATAGGAGAACATTTACAACTAAAAATGgtaaagtgtct--tctctctgtaaatgttctata-gagatttattttttccttaagaataaattacaagtctaacccatttatacctgtgatcttttctggtg

upper sequence: Vv07s0191g00060.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA08G45770.1 (Glycine max), 5'ss of exon 5
AAGAGGGCCTCAAAGATTCGAAAGCTTTTTAACCTCTCGAAGGAGGATGATGTTCGGAAGTATGTGAACACTTATCGCCGAACTTTTACTACTAAATCTGgt--------tggtgttctaatttcttttttgatgggaaatatgatatgtttactgacattatttactaaagatgtatgattggtcttatctgtgtgcctggcag
||||| || || || || || || || || ||||| || ||||||||||||||| |||||||||| ||||| || || || || ||||| || ||| |||||        ||||| | | || |  | ||| ||     |  |||    || | | |     ||  || || | |    |  |||| |     ||||        
AAGAGAGCATCCAAAATCCGTAAACTGTTCAACCTGTCTAAGGAGGATGATGTTAGGAAGTATGTCAACACCTACCGTCGTACATTTACGACAAAAGCTGgtaaaatccctggtgcttttatgttgtgtttaattttgtaattgactgattgattaaagaatttgtcttaaaaagagcaaagggtcatggtaatgtgaaa-----

upper sequence: Vv07s0191g00060.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA18G26190.1 (Glycine max), 5'ss of exon 4
AAGAGGGCCTCAAAGATTCGAAAGCTTTTTAACCTCTCGAAGGAGGATGATGTTCGGAAGTATGTGAACACTTATCGCCGAACTTTTACTACTAAATCTGgttggtgttctaatttcttttttgatgggaaatatgatatgtttactgacattatttactaaagatgtatgattggtcttatctgtgtgcct-ggcag-------
||||| || || || || || || || || ||||| || ||||||||||||||| |||||||||| ||||| || || || || ||||| || ||| |||||     ||| |  | ||||| || || |   | | || |  | | |||| | ||| | ||||||  |    |       | |   | |  | || |        
AAGAGAGCATCCAAAATCCGTAAACTGTTCAACCTGTCCAAGGAGGATGATGTTAGGAAGTATGTCAACACCTACCGTCGTACATTTACGACAAAAGCTGgtaaa-attccatgtgcttttatgttgag---tttaattttgtaattgac-tgattgattaaagaatttgtctaaaaaagaccaaagggttttggtaaaacgtgt

upper sequence: Vv07s0191g00060.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: PP1S311_33V6.2 (Physcomitrella patens), 5'ss of exon 6
AAGAGGGCCTCAAAGATTCGAAAGCTTTTTAACCTCTCGAAGGAGGATGATGTTCGGAAGTATGTGAACACTTATCGCCGAACTTTTACTACTAAATCTGgttggtgttctaatttcttttttgatgggaaatatgatat--gtttactgacattat--ttactaaagatgtat---gattggtcttatctgtgtgcctggcag---------
||||||||  | |||||||| ||||| ||||||||| | ||||||||||| || ||||| |||||||||||||| |||||  | |||    |     | |||   || | ||||  | |||     |     | | || |  ||  | |  |||||   ||      ||| | |   || ||   |    ||| ||  | |  |         
AAGAGGGCTACCAAGATTCGGAAGCTCTTTAACCTCACCAAGGAGGATGACGTGCGGAAATATGTGAACACTTACCGCCGCTCATTTGTGTCAGCGACCGgtatttgat-taataccctttccttcgcctgttgtcattttggtgaaatagcattagggttttcgtggatctttttagactgacatctgttgtctgtttcgttggtttttcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349825698|gb|FQ421797.1|FQ421797
EST:     TGTTCGGAAGTATGTGAACACTTATCGCCGAACTTTTACTACTAAATCTG                         GTAAGAAGTGCAGTAAAGCTCCCAAAATACAGAGGCTGGTGACTCCCTTGA
genomic: TGTTCGGAAGTATGTGAACACTTATCGCCGAACTTTTACTACTAAATCTGgttggtgttc ... tgcctggcagGTAAGAAGTGCAGTAAAGCTCCCAAAATACAGAGGCTGGTGACTCCCTTGA
EST: gi|110416628|gb|EC982622.1|EC982622
EST:     TGTTCGGAAGTATGTGAACACTTATCGCCGAACTTTTACTACTAAATCTG                         GTAAGAAGTGCAGTAAAGCTCCCAAAATACAGAGGCTGGTGACTCCCTTGA
genomic: TGTTCGGAAGTATGTGAACACTTATCGCCGAACTTTTACTACTAAATCTGgttggtgttc ... tgcctggcagGTAAGAAGTGCAGTAAAGCTCCCAAAATACAGAGGCTGGTGACTCCCTTGA
EST: gi|110406936|gb|EC972523.1|EC972523
EST:     TGTTCGGAAGTATGTGAACACTTATCGCCGAACTTTTACTACTAAATCTG                         GTAAGAAGTGCAGTAAAGCTCCCAAAATACAGAGGCTGGTGACTCCCTTGA
genomic: TGTTCGGAAGTATGTGAACACTTATCGCCGAACTTTTACTACTAAATCTGgttggtgttc ... tgcctggcagGTAAGAAGTGCAGTAAAGCTCCCAAAATACAGAGGCTGGTGACTCCCTTGA
EST: gi|351027768|gb|FQ446935.1|FQ446935
EST:     TGTTCGGAAGTATGTGAACACTTATCGCCGAACTTTTACTACTAAATCTG                         GTAAGAAGTGCAGTAAAGCTCCCAAAATACAGAGGCTGGTGACTCCCTTGA
genomic: TGTTCGGAAGTATGTGAACACTTATCGCCGAACTTTTACTACTAAATCTGgttggtgttc ... tgcctggcagGTAAGAAGTGCAGTAAAGCTCCCAAAATACAGAGGCTGGTGACTCCCTTGA
EST: gi|30131295|gb|CB916634.1|CB916634
EST:     TGTTCGGAAGTATGTGAACACTTATCGCCGAACTTTTACTACTAAATCTG                         GTAAGAAGTGCAGTAAAGCTCCCAAAATACAGAGGCTGGTGACTCCCTTGA
genomic: TGTTCGGAAGTATGTGAACACTTATCGCCGAACTTTTACTACTAAATCTGgttggtgttc ... tgcctggcagGTAAGAAGTGCAGTAAAGCTCCCAAAATACAGAGGCTGGTGACTCCCTTGA
EST: gi|32269925|gb|CD719084.1|CD719084
EST:     TGTTCGGAAGTATGTGAACACTTATCGCCGAACTTTTACTACTAAATCTG                         GTAAGAAGTGCAGTAAAGCTCCCAAAATACAGAGGCTGGTGACTCCCTTGA
genomic: TGTTCGGAAGTATGTGAACACTTATCGCCGAACTTTTACTACTAAATCTGgttggtgttc ... tgcctggcagGTAAGAAGTGCAGTAAAGCTCCCAAAATACAGAGGCTGGTGACTCCCTTGA
EST: gi|110732898|gb|EE108585.1|EE108585
EST:     TGTTCGGAAGTATGTGAACACTTATCGCCGAACTTTTACTACTAAATCTG                         GTAAGAAGTGCAGTANAGCTCCCAAAATACAGAGGCTGGTGACTCCCTTGA
genomic: TGTTCGGAAGTATGTGAACACTTATCGCCGAACTTTTACTACTAAATCTGgttggtgttc ... tgcctggcagGTAAGAAGTGCAGTAAAGCTCCCAAAATACAGAGGCTGGTGACTCCCTTGA