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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCTTGAGCATGAGTAGATTGGGCGGAGCTGGTGCAGTTGCACCACTTGTAACAGACATTCCATTAGCATCAGTCGAGgtaatcaacaacaagaagatatataaacttgccatttaattctccccatgtctttaattgtaggtttctttcttttttctgctttttttaag

Basic information

species Vitis vinifera
transcript Vv07s0141g00220.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0141g00220.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA03G31510.1 (Glycine max), 5'ss of exon 5
GTCTTGAGCATGAGTAGATTGGGCGGAGCTGGTGCAGTTGCACCACTTGTAACAGACATTCCATTAGCATCAGTCGAGgtaatcaacaacaagaagatatataaacttgccatttaattctccccatgtctttaa-ttgtaggtttctttcttttttctgctttttttaag
|| ||||||||||||||| |||| ||||| |||||||| |||||||| ||||| |||||||||||| ||||||||||||| || |   | |||||    |        |   |||| |  |    || ||||| | ||  | ||   ||      ||| |   |  | |  
GTTTTGAGCATGAGTAGACTGGGTGGAGCCGGTGCAGTGGCACCACTGGTAACTGACATTCCATTATCATCAGTCGAGgtgattattgagaagaaatagttgttgaaagaattttattatttttaatatctttgacttccaagtgatttaacaaattcagtggtgatcag-

upper sequence: Vv07s0141g00220.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA10G03690.1 (Glycine max), 5'ss of exon 5
GTCTTGAGCATGAGTAGATTGGGCGGAGCTGGTGCAGTTGCACCACTTGTAACAGACATTCCATTAGCATCAGTCGAGgtaatcaacaacaagaagatatataaacttgccatttaattctccccatgtctttaattgtaggtttctttcttttttctgctttttttaag
|| |||||||||||||||||||| |||||||||||||| |||||||| ||||| || || |||||| | |||||||||||||| |        ||  ||||          ||||  ||||| |||  |  | || | ||| | ||| ||| ||                
GTTTTGAGCATGAGTAGATTGGGTGGAGCTGGTGCAGTGGCACCACTGGTAACTGATATCCCATTATCGTCAGTCGAGgtaattactctacctaatgtatagttggcacaaatttgtttctctccaatttatcaaatttag-tatctatctattcag-------------

upper sequence: Vv07s0141g00220.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA19G34360.1 (Glycine max), 5'ss of exon 5
GTCTTGAGCATGAGTAGATTGGGCGGAGCTGGTGCAGTTGCACCACTTGTAACAGACATTCCATTAGCATCAGTCGAGgtaatcaacaacaagaagatatataaacttgccatttaattctccccatgtctttaattgtaggtttctttcttttttctgctttttttaag
|| ||||||||||||||| |||| ||||| |||||||| |||||||| ||||| ||||| |||||| ||||||||||||| || |   | |||||    |        |   |||| |  |    || ||||| | |  | ||   ||  |   ||| |   |  | |  
GTTTTGAGCATGAGTAGACTGGGTGGAGCCGGTGCAGTGGCACCACTGGTAACTGACATCCCATTATCATCAGTCGAGgtgattattgagaagaaatagttgttgaaagaattttattatttttaatatctttgacttcaagtgatttaataaattcagtgatgatcag-

upper sequence: Vv07s0141g00220.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA02G16110.1 (Glycine max), 5'ss of exon 6
GTCTTGAGCATGAGTAGATTGGGCGGAGCTGGTGCAGTTGCACCACTTGTAACAGACATTCCATTAGCATCAGTCGAGgtaatcaacaacaagaagatatataaacttgccatttaattctccccatgtctttaattgtaggtttctttcttttttctgctttttttaag
                            ||| |||||| |||||||| ||||| ||||| |||||| | |||||||||||||| |        ||  ||||          ||||  ||||| |||  | |  ||||    || ||| ||  ||                
----------------------------CTGATGCAGTGGCACCACTGGTAACTGACATCCCATTATCGTCAGTCGAGgtaattattctacctaacgtatagtcggcacaaatttgtttctctccaattatcaaattt--agtatctatcaattcag-------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|34550688|gb|CF518906.1|CF518906
EST:     CTGGTGCAGTTGCACCACTTGTAACAGACATTCCATTAGCATCAGTCGAG                         GAAGAAGCAAGTGAAGGGGGAAGAAATGAACCGGCATGGGAGAAATGGTCA
genomic: CTGGTGCAGTTGCACCACTTGTAACAGACATTCCATTAGCATCAGTCGAGgtaatcaaca ... tttttttaagGAAGAAGCAAGTGAAGGGGGAAGAAATGAACCGGCATGGGAGAAATGGTCA
EST: gi|30303738|gb|CB980532.1|CB980532
EST:     CTGGTGCAGTTGCACCACTTGTAACAGACATTCCATTAGCATCAGTCGAG                         GAAGAAGCAAGTGAAGGGGGAAGAAATGAACCGGCATGGGAGAAATGGTCA
genomic: CTGGTGCAGTTGCACCACTTGTAACAGACATTCCATTAGCATCAGTCGAGgtaatcaaca ... tttttttaagGAAGAAGCAAGTGAAGGGGGAAGAAATGAACCGGCATGGGAGAAATGGTCA
EST: gi|32459553|gb|CD800727.1|CD800727
EST:     CTGGTGCAGTTGCACCACTTGTAACAGACATTCCATTAGCATCAGTCGAG                         GAAGAAGCAAGTGAAGGGGGAAGAAATGAACCGGCATGGGAGAAATGGTCA
genomic: CTGGTGCAGTTGCACCACTTGTAACAGACATTCCATTAGCATCAGTCGAGgtaatcaaca ... tttttttaagGAAGAAGCAAGTGAAGGGGGAAGAAATGAACCGGCATGGGAGAAATGGTCA
EST: gi|34549352|gb|CF517584.1|CF517584
EST:     CTGGTGCAGTTGCACCACTTGTAACAGACATTCCATTAGCATCAGTCGAG                         GAAGAAGCAAGTG
genomic: CTGGTGCAGTTGCACCACTTGTAACAGACATTCCATTAGCATCAGTCGAGgtaatcaaca ... tttttttaagGAAGAAGCAAGTG
EST: gi|34549438|gb|CF517670.1|CF517670
EST:     CTGGTGCAGTTGCACCACTTGTAACAGACATTCCATTAGCATCAGTCGAG                         GAAGAAGCAAGTGAAGGGGGAAGAAATGAACCGGCATGGGAGAAATGGTCA
genomic: CTGGTGCAGTTGCACCACTTGTAACAGACATTCCATTAGCATCAGTCGAGgtaatcaaca ... tttttttaagGAAGAAGCAAGTGAAGGGGGAAGAAATGAACCGGCATGGGAGAAATGGTCA
EST: gi|34550601|gb|CF518819.1|CF518819
EST:     CTGGTGCAGTTGCACCACTTGTAACAGACATTCCATTAGCATCAGTCGAG                         GAAGAAGCAAGTGAAGGGGGAAGAAATGAACCGGCATGGGAGAAATGGTCA
genomic: CTGGTGCAGTTGCACCACTTGTAACAGACATTCCATTAGCATCAGTCGAGgtaatcaaca ... tttttttaagGAAGAAGCAAGTGAAGGGGGAAGAAATGAACCGGCATGGGAGAAATGGTCA