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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCCCTATAGAAATGGATATTGATGGAGTAAAGAGTTCTGTGCTTTACTTAGATACAGAGGGATTTGAAAGTATTGGCAAGTCAAATGTATATGATGACCGgtaatcttccagtcatgaagtcatcttcaatatgcatgcagtggttgtaaatctttttgtataacctgcctttccaatttcactttttgcag

Basic information

species Vitis vinifera
transcript Vv07s0141g00110.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0141g00110.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: LOC_Os03g58240.1 (Oryza sativa), 5'ss of exon 5
CCCCTATAGAAATGGATATTGATGGAGTAAAGAGTTCTGTGCTTTACTTAGATACAGAGGGATTTGAAAGTATTGGCAAGTCAAATGTATATGATGACCGgtaatcttccagtcatg-------aagtcatcttcaatatgcat--gcagtggttgtaa----atctttttgtataacctgcctttccaatttcactttttgcag
| ||| | |||||||| ||||||||   |||    ||||| |||||| | ||||| || |||||||| ||| |||| ||||||||||||||||||||  |||     | |||  |||       |||   | | | || | | |   |  || | | ||    |  || ||||          ||    |||||  || | ||||
CACCTGTTGAAATGGACATTGATGGTTCAAAAGTGTCTGTCCTTTACCTTGATACTGAAGGATTTGAGAGTGTTGGGAAGTCAAATGTATATGATGATAGgtctgtgtgcagaaatggaatgtgaagaagtttcccatttactttttctatgatagaaaggttacattgttgttggtatcattttattcatttcttttgtggcag

upper sequence: Vv07s0141g00110.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA02G16130.1 (Glycine max), 5'ss of exon 4
CCCCTATAGAAATGGATATTGATGGAGTAAAGAGTTCTGTGCTTTACTTAGATACAGAGGGATTTGAAAGTATTGGCAAGTCAAATGTATATGATGACCGgtaatcttccagtcatgaagtcatcttcaatatgcatgcagtggttgtaaatctttttgtataacctgcctttccaatttcactttttgcag
| ||||||||  |||||||| |||||||||  | ||||||  ||||| | |||||||| |||||||||||| |||| ||||| |||||||||||||| |||||||         || | |   |||    | ||  |  | |  |     ||  ||| || || | |    ||    || |   ||||||||
CACCTATAGATTTGGATATTAATGGAGTAAGAACTTCTGTCTTTTACCTTGATACAGAAGGATTTGAAAGTGTTGGGAAGTCCAATGTATATGATGATCGgtaattgctttcagatcatgcattctgtgttctgtgttgaatcatatatgattgtttagt-tagctttttgttgtgtttgc---ttttgcag

upper sequence: Vv07s0141g00110.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA10G03660.1 (Glycine max), 5'ss of exon 5
CCCCTATAGAAATGGATATTGATGGAGTAAAGAGTTCTGTGCTTTACTTAGATACAGAGGGATTTGAAAGTATTGGCAAGTCAAATGTATATGATGACCGgtaatcttccagtcatgaagtcatcttcaatatgcatgcagtggttgtaaatctttttgtataacctgcctttccaatttcactttttgcag
| ||||||||  |||||||| |||||||||  | ||||||  ||||| | |||||||| |||||||||||| |||| ||||| |||||||||||||| |||||||         || | |   |||    | ||  |  | |  |     ||  ||| || |  | |   ||||   | |    ||||||||
CACCTATAGATTTGGATATTAATGGAGTAAGAACTTCTGTCTTTTACCTTGATACAGAAGGATTTGAAAGTGTTGGGAAGTCCAATGTATATGATGATCGgtaattgctttcagatcatgcattctgtgttctgtgttgaatcatatatgattgtttagt-tggctt---tttcttgtgtttgcttttgcag

upper sequence: Vv07s0141g00110.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: AT2G38840.1 (Arabidopsis thaliana), 5'ss of exon 5
CCCCTATAGAAATGGATATTGATGGAGTAAAGAGTTCTGTGCTTTACTTAGATACAGAGGGATTTGAAAGTATTGGCAAGTCAAATGTATATGATGACCGgtaatcttccagtcatgaagtcatcttcaatatgcatgcagtggttgtaaatctttttgtataacctgcctttccaatttcactttttgcag
| ||  ||||  |||| |||||||||||||| | ||| ||  ||||| | || || |||||||| |||||| |||| ||||||||||| ||||||||||||||  |   ||||    |  |   |     ||  | |    | |  | |  |||   | | ||| |    ||||    |  |  ||  |   
CACCATTAGAGCTGGAGATTGATGGAGTAAAAACTTCCGTAATTTACCTCGACACTGAGGGATTCGAAAGTGTTGGAAAGTCAAATGTTTATGATGACCGgtacccagacagttgcaacatttgcacatttaaacttttctttgcggaagctctgaatatctaatcaa--tttctgtgtaaatattcag---