1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GTTCGTAACAAGTTATTGACACTCTTGGCAATCATGTTAGAGTTTGGTGCACTAATTTGgtatgtcaaattacacatgttctgcttaccattcatttcttctattcatcatattcatatttgatgacatgtagaaaccacatgaaattgaaattattgt...
species | Vitis vinifera |
transcript | Vv07s0130g00230.t01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: AAGTTATTGACACTCTTGGCAATCATGTTAGAGTTTGGTGCACTAATTTG -T----TT-AAGCTACATCCCCTTCGCGAGGTCCATGGTTTCAAAGATCATEST: gi|110399003|gb|EC965487.1|EC965487
genomic: AAGTTATTGACACTCTTGGCAATCATGTTAGAGTTTGGTGCACTAATTTGgtatgtcaaa ... gaataaccagGTACAGTTTAAGCTACATCCCCTTCGCGAGGTCCATGGTTTCAAAGATCAT
EST: AAGTTATTGACACTCTTGGCAATCATGTTAGAGTTTGGTGCACTAATTTG GTACAGTTTAAGCTACATCCCCTTCGCGAGGTCCATGGTTTCAAAGATCATEST: gi|33402532|gb|CF208159.1|CF208159
genomic: AAGTTATTGACACTCTTGGCAATCATGTTAGAGTTTGGTGCACTAATTTGgtatgtcaaa ... gaataaccagGTACAGTTTAAGCTACATCCCCTTCGCGAGGTCCATGGTTTCAAAGATCAT
EST: AAGTTATTGACACTCTTGGCAATCATGTTAGAGTTTGGTGCACTAATTTG GTACAGTTTAAGCTACATCCCCTTCGCGAGGTCCATGGTTTCAAAGATCATEST: gi|33402509|gb|CF208136.1|CF208136
genomic: AAGTTATTGACACTCTTGGCAATCATGTTAGAGTTTGGTGCACTAATTTGgtatgtcaaa ... gaataaccagGTACAGTTTAAGCTACATCCCCTTCGCGAGGTCCATGGTTTCAAAGATCAT
EST: AAGTTATTGACACTCTTGGCAATCATGTTAGAGTTTGGTGCACTAATTTG GTACAGTTTAAGCTACATCCCCTTCGCGAGGTCCATGGTTTCAAAGATCAT
genomic: AAGTTATTGACACTCTTGGCAATCATGTTAGAGTTTGGTGCACTAATTTGgtatgtcaaa ... gaataaccagGTACAGTTTAAGCTACATCCCCTTCGCGAGGTCCATGGTTTCAAAGATCAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTCGTAACAAGTTATTGACACTCTTGGCAATCATGTTAGAGTTTGGTGCACTAATTTGgtatgtcaaattacacatgttctgcttaccattcatttcttctattcatcatattcatatttgatgacatgtagaaaccacatgaaattgaaattattgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - attgaaa