Sequence
atgc intronic sequence ATGC exonic sequenceAAGATCAAATGCAATGCTTGCTGTTGATTGTGAGATGGTTCTCTGTGAAGATGGAACTGAAGGTTTAGTGAGGGTATGTGTTGTGGATCGCAATTTACAGgtactaatggaactttttaaaccttatatgctatataagcatcttttctcccattacattaccaaccttctctaagagaaggtcttgaatatcactttggaatattgtctttcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0129g01120.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA17G18400.1 (Glycine max), 5'ss of exon 5
AAGATCAAATGCAATGCTTGCTGTTGATTGTGAGATGGTTCTCTGTGAAGATGGAACTGAAGGTTTAGTGAGGGTATGTGTTGTGGATCGCAATTTACAGgta-ctaatgga-actttttaaaccttatatgctatataagcatcttttctccca--------ttacattaccaaccttctctaagagaaggtcttgaatatcactttggaatattgtctttcag----------
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GAAGTCTACTGAAATGGTTGCTGTTGACTGCGAAATGGTTCTCTGTGAAGATGGGACTGAAGCAGTAGTTAAAGTCTGTGTGGTAGACCATAATTTAGAGgtaatttatgcatactctttcttttgcataacccccccacccccctcccaaaaaaaaaagaggttgcac-ataaattgtgtttaaactgctgtcctttacgacattgtagatagataattttcggaacttttcag
upper sequence: Vv07s0129g01120.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: AT3G50100.1 (Arabidopsis thaliana), 5'ss of exon 5
AAGATCAAATGCAATGCTTGCTGTTGATTGTGAGATGGTTCTCTGTGAAGATGGAACTGAAGGTTTAGTGAGGGTATGTGTTGTGGATCGCAATTTACAGgtactaatggaactttttaaaccttatatgctatataagcatcttttctcccattacattaccaaccttctctaagagaaggtcttgaatatcactttggaatattgtctttcag
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GGAATCAACTAACATGGTAGCTGTTGATTGTGAGATGGTTCTTTGTGAAGATGGGACTGAGGGTTTAGTTAGAGTTGGTGTTGTAGACCGTGATTTAAAGgtatagcttagag-----agaatctttatgctttagtgattcgtcttttcgcaatgga---cctgctttcttgacgagg-gttatcaaatgttgaatggctttag----------
upper sequence: Vv07s0129g01120.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: AT5G05540.2 (Arabidopsis thaliana), 5'ss of exon 5
AAGATCAAATGCAATGCTTGCTGTTGATTGTGAGATGGTTCTCTGTGAAGATGGAACTGAAGGTTTAGTGAGGGTATGTGTTGTGGATCGCAATTTACAGgtactaatggaactttttaaaccttatatgctatataagcatcttttctcccattacattaccaaccttctctaagagaaggtcttgaatatcactttggaatattgtctttcag
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GACAAAGATCGAAATGATTGCCATTGATTGTGAGATGGTTCTTTGTGAAGATGGGAGTGAAGCTGTTGTTAGAGTTGCTGCAGTTGACCGTGATTTAAAGgt----------ctctttacagctt-tattttcgatgtataccttttcgttttttacagaactgtgctgataataaatcag----------------------------------
upper sequence: Vv07s0129g01120.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: AT5G67240.2 (Arabidopsis thaliana), 5'ss of exon 5
AAGATCAAATGCAATGCTTGCTGTTGATTGTGAGATGGTTCTCTGTGAAGATGGAACTGAAGGTTTAGTGAGGGTATGTGTTGTGGATCGCAATTTACAGgtactaatggaactttttaaaccttatatgctatataagcatcttttctcccattacattacca-accttctctaagagaaggtcttgaatatcactttggaatattgtctttcag
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TAAATCTACTAGAATGCTTTCTATTGATTGTGAGATGGTTACCTGTGAAGATGGGAGCCAGGCTTTAGTTAGAGTTGGCGCTGTGGACCGTGACTTAAAGgtc----tgtagctct--agaccattcaatctg-atgttcatctgtgatcgggcattgtaaccatgttgtttttatctgatgttcttcaattag----------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110412729|gb|EC978488.1|EC978488EST: ATGGAACTGAAGGTTTAGTGAGGGTATGTGTTGTGGATCGCAATTTACAG GTCAAACTTAATGAACTTGTAAAGCCCCATAAAGCGGTTGTAGATTATAGA
genomic: ATGGAACTGAAGGTTTAGTGAGGGTATGTGTTGTGGATCGCAATTTACAGgtactaatgg ... tgtctttcagGTCAAACTTAATGAACTTGTAAAGCCCCATAAAGCGGTTGTAGATTATAGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AAGATCAAATGCAATGCTTGCTGTTGATTGTGAGATGGTTCTCTGTGAAGATGGAACTGAAGGTTTAGTGAGGGTATGTGTTGTGGATCGCAATTTACAGgtactaatggaactttttaaaccttatatgctatataagcatcttttctcccattacattaccaaccttctctaagagaaggtcttgaatatcactttggaatattgtctttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG