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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTGTCAATAGATAGCCTTGAGAAGGAGAGGGACTTCTACTTTGCAAAATTGAGGGATATTGAAATTTTGTGCCAGTGTCCAGAGATTGAACACTTAACTgtatggttttctgagcgcttcgaggctttaagattaatttcataatgcttaataactaaacatgagtaaccactgactgctagtgtcttctgtcctgtttgcag

Basic information

species Vitis vinifera
transcript Vv07s0129g01080.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0129g01080.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA01G39720.1 (Glycine max), 5'ss of exon 5
GCTGTCAATAGATAGCCTTGAGAAGGAGAGGGACTTCTACTTTGCAAAATTGAGGGATATTGAAATTTTGTGCCAGTGTCCAGAGATTGAACACTTAACTgtatggttttctgagcgcttcgaggctttaa---gattaatttcataatgcttaataacta-----aacatgagtaaccactgactgctagtgtc--ttctgtcctgtttgcag-----------------
| |||| || |||||||||||||||||  |||| ||||||||||||||  |||| |||||||| ||  ||||||||  ||| ||||| ||||||| | | |||   |  | | || | ||  |  |||| |    |||   ||  | |  |  | ||| |      |  || |||| | | |        || |   |  | | |  ||||                    
GTTGTCGATTGATAGCCTTGAGAAGGAACGGGATTTCTACTTTGCAAAGCTGAGAGATATTGAGATACTGTGCCAGACTCCTGAGATAGAACACTCACCGgtactatgctttcagagttttta--ctttgatttaatttgattagtgaaacccattaattggtaatactattagtatctattagtattaggtattgatcttatgcgatttgattggttgtttgtgtgtcag

upper sequence: Vv07s0129g01080.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA11G05560.1 (Glycine max), 5'ss of exon 5
GCTGTCAATAGATAGCCTTGAGAAGGAGAGGGACTTCTACTTTGCAAAATTGAGGGATATTGAAATTTTGTGCCAGTGTCCAGAGATTGAACACTTAACTgtatggttttctga------gcgcttcgag-gctttaa---gattaatttcataatgcttaataacta--aacatgagtaaccactgactgctagtgtcttctgtcctgtttgcag-----
| |||| || |||||||||||||||||  | || |||||||| |||||  |||| |||||||| ||  ||||||||  ||| ||||| ||||||| | | |||  ||  | | |          || ||  ||||| |   | ||   ||  | |  |  |||||     |  |  | ||   | |||      |||  ||   | |||||||        
GTTGTCCATTGATAGCCTTGAGAAGGAACGAGATTTCTACTTCGCAAAGCTGAGAGATATTGAGATACTGTGCCAGACTCCTGAGATAGAACACTCACCGgtactgtgctttcatactctataatttgaatgctttgatttgctttgattagtgaaacacaataatcggtattactattaggtaatgatcatatgtgatttgattgctgtttgtgtttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110732455|gb|EE107757.1|EE107757
EST:     TGAGGGATATTGAAATTTTGTGCCAGTGTCCAGAGATTGAACACTTTACT                         GTTGTTGGAGC
genomic: TGAGGGATATTGAAATTTTGTGCCAGTGTCCAGAGATTGAACACTTAACTgtatggtttt ... ctgtttgcagGTTGTTGGAGC
EST: gi|34544613|gb|CF512845.1|CF512845
EST:     TGAGGGATATTGAAATTTTGTGCCAGTGTCCAGAGATTGAACACTTAACT                         GTTGTTGGAGCAATTAAGAGGATCCTATATGCTACAGATGATAATGCCTCA
genomic: TGAGGGATATTGAAATTTTGTGCCAGTGTCCAGAGATTGAACACTTAACTgtatggtttt ... ctgtttgcagGTTGTTGGAGCAATTAAGAGGATCCTGTATGCTACAGATGATAATGCCTCA
EST: gi|110702076|gb|EE080376.1|EE080376
EST:     GAGGGATATTGAAATTTTGTGCCAGTGTCCAGAGATCTGA-CACTTTACT                         GTTGTTGGAGCAATTAAGAAGATCCTGTATGCTACAGATGAT
genomic: GAGGGATATTGAAATTTTGTGCCAGTGTCCAGAGAT-TGAACACTTAACTgtatggtttt ... ctgtttgcagGTTGTTGGAGCAATTAAGAGGATCCTGTATGCTACAGATGAT
EST: gi|33406833|gb|CF212460.1|CF212460
EST:     TGAGGGATATTGAAATTTTGTGCCAGTGTCCAGAGATTGAACACTTAACT                         GTTGTTGGAGCAATTAAGAGGATCCTATATGCTACAGATGATAATGCCTCA
genomic: TGAGGGATATTGAAATTTTGTGCCAGTGTCCAGAGATTGAACACTTAACTgtatggtttt ... ctgtttgcagGTTGTTGGAGCAATTAAGAGGATCCTGTATGCTACAGATGATAATGCCTCA