1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
AGGTGCCACGGGTTTGGTATTGACAGTTGGAAGTGAAGTGTTTGAGGAGTCAGGGAGATCCCTTGTACGTGGAACACTAGATTATCTCCAAGGTCTCAAGgtttgtcctattcagtgtttgcaaattaacttaaaagacacacacctttgcatgcatgtgccgttgtttcaagcttaatttttggcaattatgtttttaag
species | Vitis vinifera |
transcript | Vv07s0104g00630.t01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CAGGGAGATCCCTTGTACGTGGAACACTAGATTATCTCCAAGGTCTCAAG ATGCTCGGAGTGAAGCGAATTGAGCGGGTTCTTCCAACTGGCACACCTTTGEST: gi|110365577|gb|EC928800.1|EC928800
genomic: CAGGGAGATCCCTTGTACGTGGAACACTAGATTATCTCCAAGGTCTCAAGgtttgtccta ... tgtttttaagATGCTCGGAGTGAAGCGAATTGAGCGGGTTCTTCCAACTGGCACACCTTTG
EST: CAGGGAGATCCCTTGTACGTGGAACACTAGATTATCTCCAAGGTCTCAAG ATGCTCGGAGTGAAGCGAATTGAGCGGGTTCTTCCAACTGGCACACCTTTG
genomic: CAGGGAGATCCCTTGTACGTGGAACACTAGATTATCTCCAAGGTCTCAAGgtttgtccta ... tgtttttaagATGCTCGGAGTGAAGCGAATTGAGCGGGTTCTTCCAACTGGCACACCTTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGGTGCCACGGGTTTGGTATTGACAGTTGGAAGTGAAGTGTTTGAGGAGTCAGGGAGATCCCTTGTACGTGGAACACTAGATTATCTCCAAGGTCTCAAGgtttgtcctattcagtgtttgcaaattaacttaaaagacacacacctttgcatgcatgtgccgttgtttcaagcttaatttttggcaattatgtttttaag
- - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC