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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCAAAAGCTCCTTCAGCTAGAGCGAGAGAAGGGGATTGTGGTCCGGTTCATGATTGGTCATAGgtatattacttatttgattcagctgaattgtgtttatgtgcttgttattattgtgtcaagcatctgctattgtgatttaatacattctaatcccttttct...

Basic information

species Vitis vinifera
transcript Vv07s0031g03090.t01
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32248254|gb|CD714073.1|CD714073
EST:     CAGCTAGAGCGAGAGAAGGGGATTGTGGTCCGGTTCATGATTGGTCATAG                         TGCAACTTCTAGCAGCATTCTAGATCGAGCGATTGACTCAGAAGAATCTCA
genomic: CAGCTAGAGCGAGAGAAGGGGATTGTGGTCCGGTTCATGATTGGTCATAGgtatattact ... gatgacacagTGCAACTTCTAGCAGCATTCTAGATCGAGCGATTGACTCAGAAGAATCTCA
EST: gi|30327891|gb|CD011153.1|CD011153
EST:     CAGCTAGAGCGAGAGAAGGGGATTGTGGTCCGGTTCATGATTGGTCATAG                         TGCAACTTCTAGCAGCATTCTAGATCGAGCGATTGACTCAGAAGAATCTCA
genomic: CAGCTAGAGCGAGAGAAGGGGATTGTGGTCCGGTTCATGATTGGTCATAGgtatattact ... gatgacacagTGCAACTTCTAGCAGCATTCTAGATCGAGCGATTGACTCAGAAGAATCTCA
EST: gi|110720016|gb|EE095627.1|EE095627
EST:     CAGCTAGAGCGAGAGAAGGGGATTGTGGTCCGGTTCATGATTGGTCATAG                         TGCAACTTCTAGCAGCATTCTAGATCGAGCGATTGACTCAGAAGAATCTCA
genomic: CAGCTAGAGCGAGAGAAGGGGATTGTGGTCCGGTTCATGATTGGTCATAGgtatattact ... gatgacacagTGCAACTTCTAGCAGCATTCTAGATCGAGCGATTGACTCAGAAGAATCTCA
EST: gi|30125799|gb|CB911138.1|CB911138
EST:     CAGCTAGAGCGAGAGAAGGGGATTGTGGTCCGGTTCATGATTGGTCATAG                         TGCAACTTCTAGCAGCATTCTAGATCGAGCGATTGACTCAGAAGAATCTCA
genomic: CAGCTAGAGCGAGAGAAGGGGATTGTGGTCCGGTTCATGATTGGTCATAGgtatattact ... gatgacacagTGCAACTTCTAGCAGCATTCTAGATCGAGCGATTGACTCAGAAGAATCTCA
EST: gi|30133769|gb|CB919108.1|CB919108
EST:     CAGCTAGAGCGAGAGAAGGGGATTGTGGTCCGGTTCATGATTGGTCATAG                         TGCAACTTCTAGCAGCATTCTAGATCGAGCGATTGACTCAGAAGAATCTCA
genomic: CAGCTAGAGCGAGAGAAGGGGATTGTGGTCCGGTTCATGATTGGTCATAGgtatattact ... gatgacacagTGCAACTTCTAGCAGCATTCTAGATCGAGCGATTGACTCAGAAGAATCTCA
EST: gi|351036166|gb|FQ464011.1|FQ464011
EST:     CAGCTAGAGCGAGAGAAGGGGATTGTGGTCCGGTTCATGATTGGTCATAG                         TGCAACTTCTAGCAGCATTCTAGATCGAGCGATTGACTCAGAAGAATCTCA
genomic: CAGCTAGAGCGAGAGAAGGGGATTGTGGTCCGGTTCATGATTGGTCATAGgtatattact ... gatgacacagTGCAACTTCTAGCAGCATTCTAGATCGAGCGATTGACTCAGAAGAATCTCA
EST: gi|71855285|gb|DT004340.1|DT004340
EST:     CAGCTAGAGCGAGAGAAGGGGATTGTGGTCCGGTTCATGATTGGTCATAG                         TGCAACTTCTAGCAGCATTCTAGATCGAGCGATTGACTCAGAAGAATCTCA
genomic: CAGCTAGAGCGAGAGAAGGGGATTGTGGTCCGGTTCATGATTGGTCATAGgtatattact ... gatgacacagTGCAACTTCTAGCAGCATTCTAGATCGAGCGATTGACTCAGAAGAATCTCA
EST: gi|110719628|gb|EE094920.1|EE094920
EST:     CAGCTAGAGCGAGAGAAGGGGATTGTGGTCCGGTTCATGATTGGTCATAG                         TGCAACTTCTAGCAGCATTCTAGATCGAGCGATTGACTCAGAAGAATCTCA
genomic: CAGCTAGAGCGAGAGAAGGGGATTGTGGTCCGGTTCATGATTGGTCATAGgtatattact ... gatgacacagTGCAACTTCTAGCAGCATTCTAGATCGAGCGATTGACTCAGAAGAATCTCA
EST: gi|30135395|gb|CB920733.1|CB920733
EST:     CAGCTAGAGCGAGAGAAGGGGATTGTGGTCCGGTTCATGATTGGTCATAG                         TGCAACTTCTAGCAGCATTCTAGATCGAGCGATTGACTCAGAAGAATCTCA
genomic: CAGCTAGAGCGAGAGAAGGGGATTGTGGTCCGGTTCATGATTGGTCATAGgtatattact ... gatgacacagTGCAACTTCTAGCAGCATTCTAGATCGAGCGATTGACTCAGAAGAATCTCA
EST: gi|32271216|gb|CD720375.1|CD720375
EST:     CAGCTAGAGCGAGAGAAGGGGATTGTGGTCCGGTTCATGATTGGTCATAG                         TGCAACTTCTAGCAGCATTCTAGATCGAGCGATTGACTCAGAAGAATCTCA
genomic: CAGCTAGAGCGAGAGAAGGGGATTGTGGTCCGGTTCATGATTGGTCATAGgtatattact ... gatgacacagTGCAACTTCTAGCAGCATTCTAGATCGAGCGATTGACTCAGAAGAATCTCA
EST: gi|161716956|gb|FC068141.1|FC068141
EST:     CAGCTAGAGCGAGAGAAGGGGATTGTGGTCCGGTTCATGATTGGTCATAG                         TGCAACTTCTAGCAGCATTCTAGATCGAGCGATTGACTCAGAAGAATCTCA
genomic: CAGCTAGAGCGAGAGAAGGGGATTGTGGTCCGGTTCATGATTGGTCATAGgtatattact ... gatgacacagTGCAACTTCTAGCAGCATTCTAGATCGAGCGATTGACTCAGAAGAATCTCA
EST: gi|110719627|gb|EE094919.1|EE094919
EST:     CAGCTAGAGCGAGAGAAGGGGATTGTGGTCCGGTTCATGATTGGTCATAG                         TGCAACTTCTAGCAGCATTCTAGATCGAGCGATTGACTCAGAAGAATCTCA
genomic: CAGCTAGAGCGAGAGAAGGGGATTGTGGTCCGGTTCATGATTGGTCATAGgtatattact ... gatgacacagTGCAACTTCTAGCAGCATTCTAGATCGAGCGATTGACTCAGAAGAATCTCA
EST: gi|161707320|gb|FC056848.1|FC056848
EST:     CAGCTAGAGCGAGAGAAGGGGATTGTGGTCCGGTTCATGATTGGTCATAG                         TGCAACTTCTAGCAGCATTCTAGATCGAGCGATTGACTCAGAAGAATCTCA
genomic: CAGCTAGAGCGAGAGAAGGGGATTGTGGTCCGGTTCATGATTGGTCATAGgtatattact ... gatgacacagTGCAACTTCTAGCAGCATTCTAGATCGAGCGATTGACTCAGAAGAATCTCA
EST: gi|30127312|gb|CB912651.1|CB912651
EST:     CAGCTAGAGCGAGAGAAGGGGATTGTGGTCCGGTTCATGATTGGTCATAG                         TGCAACTTCTAGCAGCATTCTAGATCGAGCGATTGACTCAGAAGAATCTCA
genomic: CAGCTAGAGCGAGAGAAGGGGATTGTGGTCCGGTTCATGATTGGTCATAGgtatattact ... gatgacacagTGCAACTTCTAGCAGCATTCTAGATCGAGCGATTGACTCAGAAGAATCTCA
EST: gi|351044383|gb|FQ452935.1|FQ452935
EST:     CAGCTAGAGCGAGAGAAGGGGATTGTGGTCCGGTTCATGATTGGTCATAG                         TGCAACTTCTAGCAGCATTCTAGATCGAGCGATTGACTCAGAAGAATCTCA
genomic: CAGCTAGAGCGAGAGAAGGGGATTGTGGTCCGGTTCATGATTGGTCATAGgtatattact ... gatgacacagTGCAACTTCTAGCAGCATTCTAGATCGAGCGATTGACTCAGAAGAATCTCA
EST: gi|32248260|gb|CD714079.1|CD714079
EST:     CAGCTAGAGCGAGAGAAGGGGATTGTGGTCCGGTTCATGATTGGTCATAG                         TGCAACTTCTAGCAGCATTCTAGATCGAGCGATTGACTCAGAAGAATCTCA
genomic: CAGCTAGAGCGAGAGAAGGGGATTGTGGTCCGGTTCATGATTGGTCATAGgtatattact ... gatgacacagTGCAACTTCTAGCAGCATTCTAGATCGAGCGATTGACTCAGAAGAATCTCA
EST: gi|32268821|gb|CD717980.1|CD717980
EST:     CAGCTAGAGCGAGAGAAGGGGATTGTGGTCCGGTTCATGATTGGTCATAG                         TGCAACTTCTAGCAGCATTCTAGATCGAGCGATTGACTCAGAAGAATCTCA
genomic: CAGCTAGAGCGAGAGAAGGGGATTGTGGTCCGGTTCATGATTGGTCATAGgtatattact ... gatgacacagTGCAACTTCTAGCAGCATTCTAGATCGAGCGATTGACTCAGAAGAATCTCA
EST: gi|351045775|gb|FQ440960.1|FQ440960
EST:     CAGCTAGAGCGAGAGAAGGGGATTGTGGTCCGGTTCATGATTGGTCATAG                         TGCAACTTCTAGCAGCATTCTAGATCGAGCGATTGACTCAGAAGAATCTCA
genomic: CAGCTAGAGCGAGAGAAGGGGATTGTGGTCCGGTTCATGATTGGTCATAGgtatattact ... gatgacacagTGCAACTTCTAGCAGCATTCTAGATCGAGCGATTGACTCAGAAGAATCTCA
EST: gi|110718742|gb|EE095919.1|EE095919
EST:     CAGCTAGAGCGAGAGAAGGGGATTGTGGTCCGGTTCATGATTGGTCATAG                         TGCAACTTCTAGCAGCATTCTAGATCGAGCGATTGACTCAGAAGAATCTCA
genomic: CAGCTAGAGCGAGAGAAGGGGATTGTGGTCCGGTTCATGATTGGTCATAGgtatattact ... gatgacacagTGCAACTTCTAGCAGCATTCTAGATCGAGCGATTGACTCAGAAGAATCTCA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGCAAAAGCTCCTTCAGCTAGAGCGAGAGAAGGGGATTGTGGTCCGGTTCATGATTGGTCATAGgtatattacttatttgattcagctgaattgtgtttatgtgcttgttattattgtgtcaagcatctgctattgtgatttaatacattctaatcccttttct

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