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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCTGTATCACTTGTACTCATCTTGTATTGTGCGCCCCGGTATGGCCAAACCAATATCTTGGTTTATATTGGCATATGCTCTATAATTGGATCATTGACAgtaagtaatcatggttttgtggctaacttatttccaaaatttcttgcttttctatttttgggctctgtcttgtcactgtatatgtgagcttatgacatttaaatccttaagtaacacatgatttagcttgctgattctaattgagcttctccccttatgcag

Basic information

species Vitis vinifera
transcript Vv07s0031g02960.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0031g02960.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA12G19960.1 (Glycine max), 5'ss of exon 5
AGCTGTATCACTTGTACTCATCTTGTATTGTGCGCCCCGGTATGGCCAAACCAATATCTTGGTTTATATTGGCATATGCTCTATAATTGGATCATTGACAgtaagtaatcatggttttgtggctaacttatttccaaaatttcttgcttttctatttttgggctctgtcttgtcactgtatatgtgagcttatgacatttaaatccttaagtaacacatgatttagcttgctgattctaattgagcttctccccttatgcag
 || ||  || |  |  |  | ||||||||||| ||||| |||||||| || ||||| |||||||||| ||| |||||||| ||| |||| || |||||||||||| |   |         | |||| |  |    | || |  |  |||| |  ||||||    | |||   |  | ||  ||| | ||   ||  | || | | |     | || ||| |||| ||| |||||   |    |  |||||           
TGCCGTGACATTGTTCTTGGTTTTGTATTGTGCTCCCCGTTATGGCCAGACTAATATTTTGGTTTATACTGGAATATGCTCGATAGTTGGGTCCTTGACAgtaagtgactcta----cacagttaaccttgtc---atatgtgatatttttatcattttggatatt-tctatactttctagctgttaact---gagttgtataccatagtccaccatatgttttaactttctgataaaatactaatttctcag---------

upper sequence: Vv07s0031g02960.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA05G33020.1 (Glycine max), 5'ss of exon 5
AGCTGTATCACTTGTACTCATCTTGTATTGTGCGCCCCGGTATGGCCAAACCAATATCTTGGTTTATATTGGCATATGCTCTATAATTGGATCATTGACAgtaagtaatcatggttttgtggctaacttatttccaaaatttcttgcttttctatttttgggctctgtcttgtcactgtatatgtgagcttatgacatttaaatccttaagtaacacatgatttagcttgctgattctaattgagcttctccccttatgcag
 || ||  || |  |  |  | ||||||||||| |||||  ||||||| || ||||| |||||||||| ||| |||||||| ||| |||| || |||||||||||| |   |         | |||| |  |    | || |  |  |||| |  ||||||    | |||   |  | ||  |||   ||   ||  | || | | |     | ||  || |||| ||| |||||   |    |  |||||           
TGCCGTGACATTGTTCTTGGTTTTGTATTGTGCTCCCCGTCATGGCCAGACTAATATTTTGGTTTATACTGGAATATGCTCGATAGTTGGGTCCTTGACAgtaagtgactctaccc----agttaaccttgtc---atatgtgatatttttatcattttggatatt-tctgtactttctagctgttgact---gagttgtataccatagtccaccatttgttttatctttctgataaaatactaatttctcag---------

upper sequence: Vv07s0031g02960.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA06G16670.1 (Glycine max), 5'ss of exon 5
AGCTGTATCACTTGTACTCATCTTGTATTGTGCGCCCCGGTATGGCCAAACCAATATCTTGGTTTATATTGGCATATGCTCTATAATTGGATCATTGACAgtaagtaatcatggttttgtggctaacttatttccaaaat-ttcttgcttttctatttttgggctctgtcttgtcactgtatatgtgagcttatgacatttaaatccttaagtaacacatgatttagcttgctgattctaattgagcttctccccttatgcag
 |||||| |  |  |  | || ||||||||||| || || | |||||| || ||||| || ||||||||||| |||||||| ||||||||||| ||||| ||||||        |||  |  | || | || |    | |  |  |  ||  |||   |      | |   |     | | | | ||  ||| ||| |   ||   |||   |  ||                                              
CGCTGTAGCTTTCTTTTTGATATTGTATTGTGCTCCTCGCTTTGGCCAGACTAATATTTTAGTTTATATTGGAATATGCTCCATAATTGGATCCTTGACTgtaagtggctcctctttc-tacccaattcatctttggagtacttatagttgactaaactcaataccagaggtcatcttttgttt-tgcacttctgatag--aatatcttgtttcccag---------------------------------------------

upper sequence: Vv07s0031g02960.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA04G38380.1 (Glycine max), 5'ss of exon 5
AGCTGTATCACTTGTACTCATCTTGTATTGTGCGCCCCGGTATGGCCAAACCAATATCTTGGTTTATATTGGCATATGCTCTATAATTGGATCATTGACAgtaagtaatcatggttttgtggctaacttatttccaaaatttcttgcttttctatttttgggctctgtcttgtcactgtatatgt-gagcttatgacatttaaatccttaagtaacacatgatttagcttgctgattctaattgagcttctccccttatgcag
 ||||||    |  |  | || ||||||||||| || ||  ||||||| || ||||| || ||||||||||| |||||||| ||||||||||| ||||| |||||| |      |||  |  | || |||| |   || |   |   ||  | |   |      | |    ||||   | | | | |  ||| ||| |   ||   |||   |  ||                                              
CGCTGTAGTGTTCTTTTTGATTTTGTATTGTGCTCCTCGCCATGGCCAGACTAATATTTTAGTTTATATTGGAATATGCTCCATAATTGGATCCTTGACTgtaagtgactcctctttc-tacccaatttatctttgaagtacttaagttgacaaaactcaataccagagaggtcatcttttgtttcgcacttctgatag--aatatcttgtttctcag---------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161718353|gb|FC065012.1|FC065012
EST:     CCAATATCTTGGTTTATATTGGCATATGCTCTATAATTGGATCATTGACA                         GTAATGAGTATAAA-GCTGTTGGCATTGC-ATAGA-CTCA
genomic: CCAATATCTTGGTTTATATTGGCATATGCTCTATAATTGGATCATTGACAgtaagtaatc ... ccttatgcagGTAATGAGTATAAAAGCTGTTGGCATTGCCATAGAACTCA