1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
ATTTATTTACAAGAAGTCTTCCTATTAGGATAATTCTAGTGGGGCCTGTTGTAACTTTGCAGTGGTTAGTTTATGACACCATCAAAGTCTTAAGTGGATTgtaagtgcatctctctctctctctctctctttgaaattgtgcttttatattattattattattattattattattattaaagtatttatttattatcatt...
species | Vitis vinifera |
transcript | Vv07s0031g02290.t01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GTAACTTTGCAGTGGTTAGTTTATGACACCATCAAAGTCTTAAGTGGATT ACCTACCAGTGGGGAAGTTCTCACTGACAAAGAAGTGAACAAAAAAGTGTAEST: gi|110358719|gb|EC923144.1|EC923144
genomic: GTAACTTTGCAGTGGTTAGTTTATGACACCATCAAAGTCTTAAGTGGATTgtaagtgcat ... tttcatgcagACCTACCAGTGGGGAAGTTCTCACTGACAAAGAAGTGAACAAAAAAGTGTA
EST: GTAACTTTGCAGTGGTTAGTTTATGACACCATCAAAGTCTTAAGTGGATT ACCTACCAGTGGGGAAGTTCTCACTGACAAAGAAGTGAACAAAAAAGTGTAEST: gi|30251981|gb|CB969714.1|CB969714
genomic: GTAACTTTGCAGTGGTTAGTTTATGACACCATCAAAGTCTTAAGTGGATTgtaagtgcat ... tttcatgcagACCTACCAGTGGGGAAGTTCTCACTGACAAAGAAGTGAACAAAAAAGTGTA
EST: GTAACTTTGCAGTGGTTAGTTTATGACCCCATCAAAGTCTTAAGTGGATT ACCTACCAGTGGGGAAGTTCTCACTGACAAAGAAGTGAACAAAAAAGTGTAEST: gi|34320428|gb|CF373182.1|CF373182
genomic: GTAACTTTGCAGTGGTTAGTTTATGACACCATCAAAGTCTTAAGTGGATTgtaagtgcat ... tttcatgcagACCTACCAGTGGGGAAGTTCTCACTGACAAAGAAGTGAACAAAAAAGTGTA
EST: GTAACTTTGCAGTGGTTAGTTTATGACACCATCAAAGTCTTAAGTGGATT ACCTACCAGTGGGGAAGTTCTCACTGACAAAGAAGTGAACAAAAAAGTGTAEST: gi|30252021|gb|CB968660.1|CB968660
genomic: GTAACTTTGCAGTGGTTAGTTTATGACACCATCAAAGTCTTAAGTGGATTgtaagtgcat ... tttcatgcagACCTACCAGTGGGGAAGTTCTCACTGACAAAGAAGTGAACAAAAAAGTGTA
EST: GTAACTTTGCAGTGGTTAGTTTATGACCCCATCAAAGTCTTAAGTGGATT ACCTACCAGTGGGGAAGTTCTCCCTGACAAAGAAGTGAACAAAAAAGTGTAEST: gi|110362008|gb|EC925514.1|EC925514
genomic: GTAACTTTGCAGTGGTTAGTTTATGACACCATCAAAGTCTTAAGTGGATTgtaagtgcat ... tttcatgcagACCTACCAGTGGGGAAGTTCTCACTGACAAAGAAGTGAACAAAAAAGTGTA
EST: GTAACTTTGCAGTGGTTAGTTTATGACACCATCAAAGTCTTAAGTGGATT ACCTACCAGTGGGGAAGTTCTCACTGACAAAGAAGTGAACAAAAAAGTGTA
genomic: GTAACTTTGCAGTGGTTAGTTTATGACACCATCAAAGTCTTAAGTGGATTgtaagtgcat ... tttcatgcagACCTACCAGTGGGGAAGTTCTCACTGACAAAGAAGTGAACAAAAAAGTGTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTTATTTACAAGAAGTCTTCCTATTAGGATAATTCTAGTGGGGCCTGTTGTAACTTTGCAGTGGTTAGTTTATGACACCATCAAAGTCTTAAGTGGATTgtaagtgcatctctctctctctctctctctttgaaattgtgcttttatattattattattattattattattattattaaagtatttatttattatcatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctctctc