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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGATAGAATCCTGGGTGCACTTTCTGCTCATATGTGGCCTGGAATGACCCTGAAATCTGGTGATAAGATAATGGAACCATCATTGCCTGAAAACCAAGgttttagatgctatcttctctgcctgtcttttttttttttttttccttttactctttagctctacattcagcgagctaattgatttcatctggtctgttcag

Basic information

species Vitis vinifera
transcript Vv07s0031g02260.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0031g02260.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: LOC_Os04g49530.1 (Oryza sativa), 5'ss of exon 5
GTTGATAGAATCCTGGGTGCACTTTCTGCTCATATGTGGCCTGGAATGACCCTGAAATCTGGTGATAAGATAATGGAACCATCATTGCCTGAAAACCAAGgttttagatgctatcttctctgcctgtcttttttttttttttttccttt-tactctttagctctacattcagcga-gctaattgatttcatctggtctgttcag
 | ||  || |||| || || |||||||| || ||||||||||||||||  |||||||||||  | |  ||||  |  ||||| |||  ||| ||  |||||     |  | |     |  |  ||  ||         | ||| |||| || | |  |||     |    || | |||||    || | | || || ||    
TTAGAGCGACTCCTTGGAGCCCTTTCTGCACACATGTGGCCTGGAATGATTCTGAAATCTGGAAACAGAATAACCGTTCCATCCTTGGTTGAGAAAGAAGgtgagttaaaccagaccattgggatgagttgacgaaccctgtttactttgtaatatagagcaacttagggtgccatgctaagctgttccct-tgctcagta---

upper sequence: Vv07s0031g02260.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G386125_T01 (Zea mays), 5'ss of exon 9
GTTGATAGAATCCTGGGTGCACTTTCTGCTCATATGTGGCCTGGAATGACCCTGAAATCTGGTGATAAGATAATGGAACCATCATTGCCTGAAAACCAAGgtt-ttagatgctatc--ttctctgcctgtcttttttttttttttttccttttact-ctttagctctacattcagcgagctaattgatttcatctggtctgttcag
 | ||  || || | || || |||||||| |||||||||||||||||||  |||||||||||  | |  ||||  |  ||||  |||  |||||| ||||||  |||  |  |||   |        || |     |  || ||  || |     | ||||  ||  || ||  |  | |||   ||   |||  ||  ||     
TTAGAGCGACTCTTTGGAGCTCTTTCTGCACATATGTGGCCTGGAATGATTCTGAAATCTGGAAACAGAATAACTGCCCCATTCTTGGTTGAAAAACAAGgtaattaagttttataaatgagtaaattgacaccgatgattgttgatcttaaccttgctttctctacacttttggaaaactatgggacgacat--ggcatgc----

upper sequence: Vv07s0031g02260.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G700662_T01 (Zea mays), 5'ss of exon 8
GTTGATAGAATCCTGGGTGCACTTTCTGCTCATATGTGGCCTGGAATGACCCTGAAATCTGGTGATAAGATAATGGAACCATCATTGCCTGAAAACCAAGgtt-ttagatgctatcttctctgcctgtcttttttttttttttttccttttactctt--tagctctacattcagcgagctaattgatttcatctggtctgttcag
 | ||  || || | || || |||||||| |||||||||||||||||||  |||||||||||  | |  ||||| |  ||||  |||  | |||| ||||||  |||  | ||||   ||  |    |      |  |  || ||  | |||  |||  | |||||||| |    ||      ||     |  |||  ||     
TTAGAGCGACTCTTTGGAGCTCTTTCTGCACATATGTGGCCTGGAATGATTCTGAAATCTGGAAACAGAATAATTGCCCCATTCTTGGTTCAAAAACAAGgtaattaagttctataa-ctgagtaaattgacactgatgattgttgatcttaaccttgcttgctctacacttttggaaaactatgggacgacatggcatgc----

upper sequence: Vv07s0031g02260.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G314386_T02 (Zea mays), 5'ss of exon 6
GTTGATAGAATCCTGGGTGCACTTTCTGCTCATATGTGGCCTGGAATGACCCTGAAATCTGGTGATAAGATAATGGAACCATCATTGCCTGAAAACCAAGgtt-ttagatgctatc--ttctctgcctgtcttttttttttttttttccttttactctttagctctacattcagcgagctaattgatttcatctggtctgttcag
 | ||  || |||| || || |||||||| |||||||||||||||||||  |||||||||||  | |  ||||  |  ||||| |||  |||||| ||||||  |||  | ||||   |        || |  |  |  || ||  || |   | |  || ||||| || |    ||      ||     |  ||   ||     
TTAGAGCGACTCCTTGGAGCTCTTTCTGCACATATGTGGCCTGGAATGATTCTGAAATCTGGAAACAGAATAACTGTCCCATCCTTGGTTGAAAAACAAGgtaattaagttctataaatgagtaaagtggccctgatgattgttgatcttagcattgctt-gctctgcactactggaaaactatgggacgacatgacatgc----

upper sequence: Vv07s0031g02260.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA09G32900.1 (Glycine max), 5'ss of exon 5
GTTGATAGAATCCTGGGTGCACTTTCTGCTCATATGTGGCCTGGAATGACCCTGAAATCTGGTGATAAGATAATGGAACCATCATTGCCTGAAAACCAAGgttttagatgctatcttctctgcctgtcttttttttttttttttccttttactctt-tagctctacattcagcgagctaattgatttcatctggtctgttcag-------------
|||||  |  ||   |||||||||||||||||||||||||||||||||    |||||||||| |||| |||||   |||||||||| ||||| ||  ||||| ||      || ||  ||    |  ||| |||      |  || |  | || || |     || | | || |     | ||||||    |  ||  | |               
GTTGAGCGTCTCTACGGTGCACTTTCTGCTCATATGTGGCCTGGAATGGTATTGAAATCTGGCGATAGGATAAATCAACCATCATTTCCTGAGAAAGAAGgtatt-----ttacctcttcaattttccttctttggagcatgctcttgctgcttttgtcaacatagaataagtgcaagtactgattttggtttatccttccccctctccccctcag

upper sequence: Vv07s0031g02260.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA16G21560.1 (Glycine max), 5'ss of exon 5
GTTGATAGAATCCTGGGTGCACTTTCTGCTCATATGTGGCCTGGAATGACCCTGAAATCTGGTGATAAGATAATGGAACCATCATTGCCTGAAAACCAAGgttttagatgctatcttctctgcctgtcttttttttttttttttccttttactctttagctctacattcagcgagctaattgatttcatctggtctgttcag-------------------------------
|||||  |  ||   |||||||||||||||||||||||||||||||||    ||||||||||  ||| |||||   |||  ||||| || || ||  ||||| |   ||    |||||| |   | || || |||      |     ||    |||| | || ||||  |   ||     ||||||  | |  ||  |                                   
GTTGAGCGTCTCTACGGTGCACTTTCTGCTCATATGTGGCCTGGAATGGTATTGAAATCTGGCAATAGGATAAATCAACTGTCATTTCCAGAGAAAGAAGgtatcttatc---tcttctttaattttccttctttggagcatgctgattgctgcttttg-tcaacatagaataagt--gctgattttgttttatccttctcctctcctccccccgcccttgcccccacaccag

upper sequence: Vv07s0031g02260.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: AT5G65960.1 (Arabidopsis thaliana), 5'ss of exon 5
GTTGATAGAATCCTGGGTGCACTTTCTGCTCATATGTGGCCTGGAATGACCCTGAAATCTGGTGATAAGATAATGGAACCATCATTGCCTGAAAACCAAGgtt-------ttagatgctatcttctc---tgcctgtcttttttttttttttttccttttactctttagctctacattcagcgagctaattgatttcatctggtctgttcag------------------------------------------------------------------------
|||||  |  |  | ||||| ||||| ||||||||||||||||| ||||  |||||||||||||||| |||||  |||||    || ||| ||    ||||||       |      || || ||||   |   ||| |   ||  |    | ||||||  |  ||    | |   |||  | ||  | | |    |      ||    |||                                                                        
GTTGAACGTCTATTTGGTGCTCTTTCGGCTCATATGTGGCCTGGGATGATTCTGAAATCTGGTGATAGGATAAATGAACCTGTGTTACCTCAAGGGGAAGgttaattgtttcttccactttcctctcccatatatgtatgagttcctgaaatgtcctttcccggttagagtttctgttcgaccaggaagtggtagaccgaaactcgacccagataagaaatcctggtgaggacatttcatttccacttggattcatgttgattgggtcttatatttcctctcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110375495|gb|EC940484.1|EC940484
EST:     CCTGAAATCTGGTGATAAGATAATGGAACCATCATTGCCTGAAAACCAAG                         AGTTGTCAGAAGAAGAATCTGATTATGAAATTGAGTATGAAATCCTCTCTG
genomic: CCTGAAATCTGGTGATAAGATAATGGAACCATCATTGCCTGAAAACCAAGgttttagatg ... gtctgttcagAGTTGTCAGAAGAAGAATCTGATTATGAAATTGAGTATGAAATCCTCTCTG
EST: gi|30302965|gb|CB979759.1|CB979759
EST:     CCTGAAATCTGGTGATAAGATAATGGAACCATCATTACCTGAAAACCAAG                         AGTTGTCAGAAGAAGAATCTGATTATGAAATTGAGTATGAAATCCTCTCTG
genomic: CCTGAAATCTGGTGATAAGATAATGGAACCATCATTGCCTGAAAACCAAGgttttagatg ... gtctgttcagAGTTGTCAGAAGAAGAATCTGATTATGAAATTGAGTATGAAATCCTCTCTG
EST: gi|110728911|gb|EE104893.1|EE104893
EST:     CCTGAAATCTGGTGATAAGATAATGGAACCATCATTGCCTGAAAACCAAG                         AGTTGTCAGAAGAAGAATCTGATTATGAAATTGAGTATGAAATCCTCTCTG
genomic: CCTGAAATCTGGTGATAAGATAATGGAACCATCATTGCCTGAAAACCAAGgttttagatg ... gtctgttcagAGTTGTCAGAAGAAGAATCTGATTATGAAATTGAGTATGAAATCCTCTCTG