1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
AGAAGGATTGTTGGACTTCATCAGAACACATCAATTGGATCAACCGATATAACGGATATGTGGGAGCCATTAGAAGATGGCCTTCTTCCgtatgaaacagtagactgtttgttgttgctaaattatgcaaaatactatgaattcatgataatccattacttttcttttgcag
species | Vitis vinifera |
transcript | Vv07s0031g02040.t01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TCAACCGATATAACGGATATGTGGGAGCCATTAGAAGATGGCCTTCTTCC CCTAGAGACTACCCGTCACGTTTCAATGATCACAATTACTTTGTCAAAGAAEST: gi|110721314|gb|EE098168.1|EE098168
genomic: TCAACCGATATAACGGATATGTGGGAGCCATTAGAAGATGGCCTTCTTCCgtatgaaaca ... tcttttgcagCCTAGAGACTACCCGTCACGTTTCAATGATCACAATTACTTTGTCAAAGAA
EST: TCAACCGATATAACGGATATGTGGGAGCCATTAGAAGATGGCCTTCTTCC CCTAGAGACTACCCGTCACGTTTCAATGATCACAATTACTTTGTCAAAGAAEST: gi|110387533|gb|EC952208.1|EC952208
genomic: TCAACCGATATAACGGATATGTGGGAGCCATTAGAAGATGGCCTTCTTCCgtatgaaaca ... tcttttgcagCCTAGAGACTACCCGTCACGTTTCAATGATCACAATTACTTTGTCAAAGAA
EST: TCAACCGATATAACGGATATGTGGGAGCCATTAGAAGATGGCCTTCTTCC CCTAGAGACTACCCGTCACGTTTCAATGATCACAATTACTTTGTCAAAGAA
genomic: TCAACCGATATAACGGATATGTGGGAGCCATTAGAAGATGGCCTTCTTCCgtatgaaaca ... tcttttgcagCCTAGAGACTACCCGTCACGTTTCAATGATCACAATTACTTTGTCAAAGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGAAGGATTGTTGGACTTCATCAGAACACATCAATTGGATCAACCGATATAACGGATATGTGGGAGCCATTAGAAGATGGCCTTCTTCCgtatgaaacagtagactgtttgttgttgctaaattatgcaaaatactatgaattcatgataatccattacttttcttttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG