Sequence
atgc intronic sequence ATGC exonic sequenceATTCGTGGAACAAATGGGACATCCAATGGCATTGTTCCTATGCTACGGGTGTTCAATGACACTGCCCGTTATGTTGATCAAGGAGGAGGCAAGAGGAAGGgtacaatcattaaaccttgctttattttgctgagggtaatgttcaaaaatttgattgtgccttgtgtaaatgtgataatctctgcatacag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0031g01990.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: LOC_Os06g07210.1 (Oryza sativa), 5'ss of exon 5
ATTCGTGGAACAAATGGGACATCCAATGGCATTGTTCCTATGCTACGGGTGTTCAATGACACTGCCCGTTATGTTGATCAAGGAGGAGGCAAGAGGAAGGgtacaatcattaaaccttgctttattttgctgagggtaatgttcaaaaatttgattgtgccttgtgtaaatgtgataatctctgcata--cag
|| |||||||||||||| || |||||||| ||||||||||||||||| || |||||||| ||||||||||||||||||||||| ||||||||||| ||||||| || || ||||||| ||| | | | || | | || || | || | | ||| ||| | | |||
ATCCGTGGAACAAATGGAACCTCCAATGGGATTGTTCCTATGCTACGTGTTTTCAATGATACTGCCCGTTATGTTGATCAAGGTGGAGGCAAGAGAAAGGgtaggttc--tatggtcaattttatttg--tgaaaattac-tctaataccataat-----ctccaggaattctcataccctcctaaaaatcag
upper sequence: Vv07s0031g01990.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: LOC_Os02g56100.1 (Oryza sativa), 5'ss of exon 5
ATTCGTGGAACAAATGGGACATCCAATGGCATTGTTCCTATGCTACGGGTGTTCAATGACACTGCCCGTTATGTTGATCAAGGAGGAGGCAAGAGGAAGGgtaca-atcattaaaccttgctttattttgctgagggtaatgttcaaaaatttgattgtgccttgtgtaaatgtgataatctctgcatacag
||||| ||||||||||| ||||| ||||| |||||||| ||||| || || |||||||| ||||| ||||||||||||||||| ||||||||||| || |||| | | ||| | | || || | ||||||| | | | | || | | || | | |
ATTCGAGGAACAAATGGAACATCTAATGGGATTGTTCCCATGCTGCGTGTTTTCAATGATACTGCACGTTATGTTGATCAAGGCGGAGGCAAGAGAAAAGgtaaataccatcagttagttagacatggacctaatttacatgttcagtgttcaggatttcttatggattcctaacattaatttag-------
upper sequence: Vv07s0031g01990.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G304362_T01 (Zea mays), 5'ss of exon 5
ATTCGTGGAACAAATGGGACATCCAATGGCATTGTTCCTATGCTACGGGTGTTCAATGACACTGCCCGTTATGTTGATCAAGGAGGAGGCAAGAGGAAGGgtacaatcattaaaccttgctttattttgctgagggtaatgttcaaaaatttgattgtgccttgtgtaaatgtgataatctctgcatacag
||||| ||||||||||| |||| ||||| |||||||||||| |||| || || ||||| ||||| || ||||||||||| || || ||||| || ||||||| | || | | | ||| | | | || |||| ||||| | | || | | ||| |
ATTCGAGGAACAAATGGATCATCAAATGGAATTGTTCCTATGTTACGTGTCTTTAATGATACTGCTCGCTATGTTGATCAGGGTGGTGGCAAAAGAAAGGgtatgtttcttcattatcgtcgcttttagttcct--tcatcttcagaaattctaacgagcttc-taaaaacttag----------------
upper sequence: Vv07s0031g01990.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G340527_T01 (Zea mays), 5'ss of exon 5
ATTCGTGGAACAAATGGGACATCCAATGGCATTGTTCCTATGCTACGGGTGTTCAATGACACTGCCCGTTATGTTGATCAAGGAGGAGGCAAGAGGAAGGgtacaatcattaaaccttgctttattttgctgagggtaatgttcaaaaatttgattgtgccttgtgtaaatgtgataatctctgcatacag
|| || ||||||||||| ||||| ||||| ||||| |||||| |||| || || ||||| ||||| |||||||||||||| || || || || || ||||||| | || | | | ||| | | | |||| ||||| || || | ||| |
ATACGAGGAACAAATGGAACATCAAATGGAATTGTGCCTATGTTACGAGTCTTTAATGATACTGCTCGTTATGTTGATCAGGGTGGTGGGAAAAGAAAGGgtatgctttttttcattatttccacttttagtaacatcgtcttcagaaattc--ttatgagcttctaaaacttag----------------
upper sequence: Vv07s0031g01990.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA04G39500.1 (Glycine max), 5'ss of exon 5
ATTCGTGGAACAAATGGGACATCCAATGGCATTGTTCCTATGCTACGGGTGTTCAATGACACTGCCCGTTATGTTGATCAAGGAGGAGGCAAGAGGAAGGgtacaatcattaaaccttgctttattttgctgagggtaatgttcaaaaatttgattgtgccttgtgtaaatgtgataat-ctctgcatacag
|||||||| ||||||||||| ||||||||||||||||| ||| | || ||||||||||| |||||||| ||||||||||| || |||||||||||||| |||| || ||| | || | | | | || | || | | | | ||| ||| | |||| || |||| | | ||
ATTCGTGGGACAAATGGGACGTCCAATGGCATTGTTCCAATGTTGCGTGTGTTCAATGATACTGCCCGCTATGTTGATCAGGGGGGAGGCAAGAGGAAAGgta-gattatttataagcaattcaaatgtttcatggctccttgtaagtttcttttcttacct---gtatgtatgattatgctcttcttttag
upper sequence: Vv07s0031g01990.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA06G15350.1 (Glycine max), 5'ss of exon 5
ATTCGTGGAACAAATGGGACATCCAATGGCATTGTTCCTATGCTACGGGTGTTCAATGACACTGCCCGTTATGTTGATCAAGGAGGAGGCAAGAGGAAGGgtacaatcattaaaccttgctttattttgctgagggtaatgttcaaaaatttgattgtgccttgtgtaaatgtgataat-ctctgcatacag
|||||||| |||||||||||||||||||||||||| || ||| | || ||||||||||| |||||||| ||||||||||| || |||||||| ||||| |||| || ||| | || | | | | || | || ||| || | |||| | |||| || |||| | | ||
ATTCGTGGGACAAATGGGACATCCAATGGCATTGTCCCGATGTTGCGTGTGTTCAATGATACTGCCCGCTATGTTGATCAGGGGGGAGGCAAAAGGAAAGgta-gattatttataagcaattcctatgtttcatggctccttgtaag---ttgcttctcttacctgtatgtatgattatgctcttcttttag
upper sequence: Vv07s0031g01990.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA05G32070.1 (Glycine max), 5'ss of exon 5
ATTCGTGGAACAAATGGGACATCCAATGGCATTGTTCCTATGCTACGGGTGTTCAATGACACTGCCCGTTATGTTGATCAAGGAGGAGGCAAGAGGAAGGgta---caatcattaaaccttgctttattttgctgagggtaatgttcaaaaat-ttgattgtgccttgtgtaaatgtgataatctctgcatacag
|| ||||| |||||||||||||| ||||| |||||||| ||||| || |||||||| || ||||| || |||||||||||||| |||||||||||||| |||| ||||||| | || || ||| | ||||| || | ||| || || | || | || | | | || |
ATCCGTGGCACAAATGGGACATCAAATGGTATTGTTCCAATGCTGCGTGTGTTCAACGATACTGCTCGCTATGTTGATCAAGGGGGAGGCAAGAGGAAAGgtaaaataatcatttacactgttgataatttctacattgtaattttaatgaatatttataaattgtcttgcacattttgtgtttcttgtag----
upper sequence: Vv07s0031g01990.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA08G15360.1 (Glycine max), 5'ss of exon 5
ATTCGTGGAACAAATGGGACATCCAATGGCATTGTTCCTATGCTACGGGTGTTCAATGACACTGCCCGTTATGTTGATCAAGGAGGAGGCAAGAGGAAGGgta--caatcattaaaccttgctttattttgctgagggtaatgttcaaaaatttgattgtgccttgtgtaaatgtgat---aatctctgcatacag----
||| ||| ||| ||||||||| ||||| |||||||| ||||| || ||||||||||| ||||| || ||||||||||| || ||||| |||||||| |||| |||| || | || || || | | | || ||| || || || |||| | | | | | | | ||||| |
ATTTGTGCCACACCTGGGACATCAAATGGTATTGTTCCAATGCTGCGTGTGTTCAATGATACTGCTCGCTATGTTGATCAGGGGGGAGGTAAGAGGAAAGgtaaataatcctttatactgtattgataattcctacagtgtaattctaatgaatgcttacaaattgtttttacttactcttattttgtgcatcttgtagg
upper sequence: Vv07s0031g01990.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: EFJ20157 (Selaginella moellendorffii), 5'ss of exon 5
ATTCGTGGAACAAATGGGACATCCAATGGCATTGTTCCTATGCTACGGGTGTTCAATGACACTGCCCGTTATGTTGATCAAGGAGGAGGCAAGAGGAAGGgtacaatcattaaaccttgctttattttgctgagggtaatgttcaaaaatttgattgtgccttgtgtaa-atgtgataatctctgcatacag--------------------
|| |||||||| || || || || || || |||||||| ||||| || ||||||||||| || || || ||||| |||||||| |||||||||||||| |||| || | | | || | |||| | | || | | | ||| || | || | | ||| | | ||| |
ATCCGTGGAACGAACGGCACGTCGAACGGGATTGTTCCCATGCTTCGAGTGTTCAATGATACCGCTCGCTATGTCGATCAAGGGGGAGGCAAGAGGAAAGgtatcat-gtacagcttttcaacattt-----ataatcatcattattacttttgtttcgttttttaccacatgcaggagcttttgcgatctatttggaaccgtggcatgcag
upper sequence: Vv07s0031g01990.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: EFJ14283 (Selaginella moellendorffii), 5'ss of exon 5
ATTCGTGGAACAAATGGGACATCCAATGGCATTGTTCCTATGCTACGGGTGTTCAATGACACTGCCCGTTATGTTGATCAAGGAGGAGGCAAGAGGAAGGgtacaatcattaaaccttgctttattttgctgagggtaatgttcaaaaatttgattgtgccttgtgtaa-atgtgataatctctgcatacag
|| |||||||| || || || || || || |||||||||||||| || ||||||||||| || || || ||||| |||||||| |||||||||||||| |||| || | | | || | |||| | | || | | | ||| || | || | | |||
ATCCGTGGAACGAACGGCACGTCGAACGGGATTGTTCCTATGCTTCGAGTGTTCAATGATACCGCTCGCTATGTCGATCAAGGGGGAGGCAAGAGGAAAGgtatcat-gtacagcttttcaacattt-----ataatcatcattattacttttgtttcgttttttaccacatgcag----------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161714052|gb|FC064127.1|FC064127EST: GTTCAATGACACTGCCCGTTATGTTGATCAAGGAGGAGGCAAGAGGAAGG GTGCTTTTGCTGTGTACTTGGAGCCATGGCATGCTGACATATTTGAGTTTC
genomic: GTTCAATGACACTGCCCGTTATGTTGATCAAGGAGGAGGCAAGAGGAAGGgtacaatcat ... ctgcatacagGTGCTTTTGCTGTGTACTTGGAGCCATGGCATGCTGACATATTTGAGTTTC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATTCGTGGAACAAATGGGACATCCAATGGCATTGTTCCTATGCTACGGGTGTTCAATGACACTGCCCGTTATGTTGATCAAGGAGGAGGCAAGAGGAAGGgtacaatcattaaaccttgctttattttgctgagggtaatgttcaaaaatttgattgtgccttgtgtaaatgtgataatctctgcatacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA