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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGAAACATTTGGTGCAATGGCAAAAACTGAAAAAATTGCATTCATTCTTGAACAAgtacgtgttatcttctttcattgttcttttaattacttctaccatttattcttttattgttcttttaattacttgtaccatttattcgtaacttattttatttttgggttcaaagttgataatgctactttttatgtaataatgttgaaattacttttcag

Basic information

species Vitis vinifera
transcript Vv07s0031g01970.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0031g01970.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA04G39520.1 (Glycine max), 5'ss of exon 5
GTGGAAACATTTGGTGCAATGGCAAAAACTGAAAAAATTGCATTCATTCTTGAACAAgtacgtgttatcttctttcattgttcttttaattacttctaccatttattcttttattgttcttttaattacttgtaccatttattcgtaacttattttatttttgggttcaaagttgataatgctactttttatgtaataatgttgaaattacttttcag
|||||||| |||||||| ||||| |||||||| ||||| ||||||||||||||||||||||  |  ||  |  ||     ||| || | |||    |  |||| |||     ||||  |  | | ||  |  ||| ||||| | |   || |||| |   |    ||||   || ||  |||                                    
GTGGAAACTTTTGGTGCCATGGCTAAAACTGAGAAAATCGCATTCATTCTTGAACAAgtactaggcattctacttt----ttccttaagtta----tgacattaatt-----attggccactaatttcatgttacaatttagttg---ctgatttgaaaatctctttcat--ttaattgtgcag----------------------------------

upper sequence: Vv07s0031g01970.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA06G15330.1 (Glycine max), 5'ss of exon 5
GTGGAAACATTTGGTGCAATGGCAAAAACTGAAAAAATTGCATTCATTCTTGAACAAgtacgtgttatcttctttcattgttcttttaattacttctaccatttattcttttattgttcttttaattacttgtaccatttattcgtaact-tattttatttttgggttcaaagttgataatgctactttttatgtaataatgttgaaattacttttcag
|||||||| ||||| || ||||| |||||||| ||||| ||||||||||||||||||||||| |  ||  |  ||  ||  |    |||  || |  |  |||    |  | |||     | |   || ||       | ||| | || | | ||| ||||    || ||                                                 
GTGGAAACTTTTGGCGCCATGGCTAAAACTGAGAAAATCGCATTCATTCTTGAACAAgtacgggacattctacttt-ttccttgagtaaggacattaattattggc-cactaatttcatatgttgctattta-gttgctgatttgaaaatctctttcatttaattgtgcag------------------------------------------------

upper sequence: Vv07s0031g01970.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA05G32030.2 (Glycine max), 5'ss of exon 5
GTGGAAACATTTGGTGCAATGGCAAAAACTGAAAAAATTGCATTCATTCTTGAACAAgtacgtgttatcttc-tttcattgttcttttaattacttcta-ccatttattcttttattgttcttttaattacttgtaccat--ttattcgtaacttattttatttttgggttcaaagttgataatgctactttttatgtaataatgttgaaattacttttcag
|||||||| |||||||| ||||| || ||||| ||||||||||||||||| ||||||||| | | ||| ||  | | | |||  |   |   |   |   |||||||||  ||   | |   |||| || ||  |  ||   |  | | |  || ||| | |                                                            
GTGGAAACTTTTGGTGCCATGGCCAAGACTGAGAAAATTGCATTCATTCTCGAACAAgtatgggatatttttgtgttactgtgatgacagcaatagcaggccatttatttcttgtgtttcaatttagttgctgatttcagaatcttccatgtctaattgtgtag----------------------------------------------------------

upper sequence: Vv07s0031g01970.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA08G15340.1 (Glycine max), 5'ss of exon 5
GTGGAAACATTTGGTGCAATGGCAAAAACTGAAAAAATTGCATTCATTCTTGAACAAgtacgtgttatcttc-tttcattgttcttttaattacttcta-ccatttattcttttattgttcttttaattacttgtaccat--ttattcgtaacttattttatttttgggttcaaagttgataatgctactttttatgtaataatgttgaaattacttttcag
||||||||||| ||||| ||||| || ||||| |||||||| |||||||||||||||||| | | ||| ||  | | | |||  |   |   |   |    || | |||  ||   |     || | || ||  || ||   |  | | |  |  ||| |||                                                            
GTGGAAACATTCGGTGCCATGGCCAAGACTGAGAAAATTGCGTTCATTCTTGAACAAgtatgagatatttttgtgttactgtgatgacagcaatagcaggtcactaatttcttgtgttgcaattcagttgctgatatcagaatcttccatgtcaaattgtatag----------------------------------------------------------

upper sequence: Vv07s0031g01970.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: AT5G64760.2 (Arabidopsis thaliana), 5'ss of exon 5
GTGGAAACATTTGGTGCAATGGCAAAAACTGAAAAAATTGCATTCATTCTTGAACAAgtacgtgttatcttctttcattgttcttttaattacttctaccatttattcttttattgttcttttaattacttgtaccatttattcgtaacttattttatttttgggttcaaagttgataatgctactttttatgtaataatgttgaaattacttttcag
||||| ||||||||||| |||||||||||||| |||||||| |||||||||||||||||| |    |  |||| | ||    ||||| ||   |  ||   ||| | ||||   || | | ||  ||  |||||   | |  |  ||| |  |  | | |     |   |||                                              
GTGGAGACATTTGGTGCTATGGCAAAAACTGAGAAAATTGCTTTCATTCTTGAACAAgtaag----actttctgttat----cttttcatatttcttaagctttgtgctttg--tgctttgttc-ttgtttgtatgttgtgattctaattattggtgtgtaaacttctgaag----------------------------------------------

upper sequence: Vv07s0031g01970.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: AT5G09900.2 (Arabidopsis thaliana), 5'ss of exon 5
GTGGAAACATTTGGTGCAATGGCAAAAACTGAAAAAATTGCATTCATTCTTGAACAAgtacgtg-ttatcttctttcattgttcttttaattacttctaccatttattcttttattgttcttttaattacttgtaccatt-tattcgtaacttattttatttttgggttcaaagttgataatgctactttttatgtaataatgttgaaattacttttcag
||||| ||||||||||| |||||||||||||| ||||||||||| || |||||||||||| |   || | |  || | |||  |  ||||| | ||      | | |||||| |||||  |   || || |   || ||| |  ||  |  |||                                                                  
GTGGAGACATTTGGTGCTATGGCAAAAACTGAGAAAATTGCATTTATCCTTGAACAAgtaaggacttgtgtagttacgttg--caattaataatttgc-tggtgttttctttcattgtgat---aacta-tcaaactattgtggtcaaactttaaag---------------------------------------------------------------

upper sequence: Vv07s0031g01970.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: PP1S257_89V6.2 (Physcomitrella patens), 5'ss of exon 5
GTGGAAACATTTGGTGCAATGGCAAAAACTGAAAAAATTGCATTCATTCTTGAACAAgtacgtgttatcttctttcattgttcttttaattacttctaccatttattcttttattgttcttttaattacttgtaccatttattcgtaacttattttatttttgggttcaaagt-tgataatgctactttttatgtaataatgttgaaattacttttcag
|||||||| |||||||| |||||||||||||| || ||||| |||||||||||||||||| |  || | || | |  |||   |  |      || |||||  || | |    ||| | |    | || |||||       ||| | |  |     | ||    ||||  |   | ||  || ||        ||| | ||  |    |    |  |||
GTGGAAACTTTTGGTGCCATGGCAAAAACTGAGAAGATTGCTTTCATTCTTGAACAAgtaaggatttttttatat--ttgcaatcctg-----ttttaccagctactttgcgtttggtttaaatagtatttgtattgaa-gttcttgagctggc--acttcgaagttcttaccgttattttgttagagcca--gtactgatagtagggtggtgtgccag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351035869|gb|FQ463714.1|FQ463714
EST:     CATTTGGTGCAATGGCAAAAACTGAAAAAATTGCATTCATTCTTGAACAA                         GTCCGGCTGTGTTTAGACCGCCAAGATTATGTTCGTGCACAAATTCTCTCA
genomic: CATTTGGTGCAATGGCAAAAACTGAAAAAATTGCATTCATTCTTGAACAAgtacgtgtta ... tacttttcagGTCCGGCTGTGTTTAGACCGCCAAGATTATGTTCGTGCACAAATTCTCTCA
EST: gi|110391070|gb|EC956024.1|EC956024
EST:     CATTTGGTGCAATGGCAAAAACTGAAAAAATTGCATTCATTCTTGAACAA                         GTCCGGCTGTGTTTAGACCGCCAAGATTATGTTCGTGCACAAATTCTCTCA
genomic: CATTTGGTGCAATGGCAAAAACTGAAAAAATTGCATTCATTCTTGAACAAgtacgtgtta ... tacttttcagGTCCGGCTGTGTTTAGACCGCCAAGATTATGTTCGTGCACAAATTCTCTCA
EST: gi|110381624|gb|EC934958.1|EC934958
EST:     CATTTGGTGCAATGGCAAAAACTGAAAAAATTGCATTCATTCTTGAACAA                         GTCCGGCTGTGTTTAGACCGCCAAGATTATGTTCGTGCACAAATTCTCTCA
genomic: CATTTGGTGCAATGGCAAAAACTGAAAAAATTGCATTCATTCTTGAACAAgtacgtgtta ... tacttttcagGTCCGGCTGTGTTTAGACCGCCAAGATTATGTTCGTGCACAAATTCTCTCA
EST: gi|27583566|gb|CB006261.1|CB006261
EST:     CATTTGGTGCAATGGCAAAAACTGAAAAAATTGCATTCATTCTTGAACAA                         GTCCGGCTGTGTTTAGACCGCCAAGATTATGTTCGTGCACAAATTCTCTCA
genomic: CATTTGGTGCAATGGCAAAAACTGAAAAAATTGCATTCATTCTTGAACAAgtacgtgtta ... tacttttcagGTCCGGCTGTGTTTAGACCGCCAAGATTATGTTCGTGCACAAATTCTCTCA
EST: gi|349825795|gb|FQ423090.1|FQ423090
EST:     CATTTGGTGCAATGGCAAAAACTGAAAAAATTGCATTCATTCTTGAACAA                         GTCCGGCTGTGTTTAGACCGCCAGGATTATGTTCGTGCACAAATTCTCTCA
genomic: CATTTGGTGCAATGGCAAAAACTGAAAAAATTGCATTCATTCTTGAACAAgtacgtgtta ... tacttttcagGTCCGGCTGTGTTTAGACCGCCAAGATTATGTTCGTGCACAAATTCTCTCA
EST: gi|161712574|gb|FC062176.1|FC062176
EST:     CATTTGGTGCAATGGCAAAAACTGAAAAAATTGCATTCATTCTTGAACAA                         GTCCGGCTGTGTTTAGACCGCCAAGATTATGTTCGTGCACAAATTCTCTCA
genomic: CATTTGGTGCAATGGCAAAAACTGAAAAAATTGCATTCATTCTTGAACAAgtacgtgtta ... tacttttcagGTCCGGCTGTGTTTAGACCGCCAAGATTATGTTCGTGCACAAATTCTCTCA