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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCAGTGCAGGCTGCATCTCTGCTGTTATTAGGACCCTTTCTGGACTATTGGTTGACAAATAAGAGAGTTGACAACTACCAATACAGTTTAATATCTGTGgtaagtattgcatcaaggtggcatgcgcatgagttgatcatctatgaagcctaacttgtttgctttgcatgcatgtgtcacatgggaaaagtttagcttg...

Basic information

species Vitis vinifera
transcript Vv07s0031g01860.t01
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110714356|gb|EE091173.1|EE091173
EST:     GGTTGACAAATAAGAGAGTTGACAACTACCAATACAGTTTAATATCTGTG                         ATGTTCATCATTCTGTCATGTACAATTGCGGTAGGAACCAACCTCAGCCAA
genomic: GGTTGACAAATAAGAGAGTTGACAACTACCAATACAGTTTAATATCTGTGgtaagtattg ... ttccctgcagATGTTCATCATTCTGTCCTGCACAATTGCGGTAGGAACCAACCTCAGCCAA
EST: gi|34544353|gb|CF512585.1|CF512585
EST:     GGTTGACAAATAAAAGAGTTGACAACTACCAATACAGTTTAATATCTGTG                         ATGTTCATCATT
genomic: GGTTGACAAATAAGAGAGTTGACAACTACCAATACAGTTTAATATCTGTGgtaagtattg ... ttccctgcagATGTTCATCATT
EST: gi|34546885|gb|CF515117.1|CF515117
EST:     GGTTGACAAATAAGAGAGTTGACAACTACCAATACAGTTTAATATCTGTG                         ATGTTCATCATTCTGTCCTGCACAATTGCGGTAGGAACCAACCTCAGCCAA
genomic: GGTTGACAAATAAGAGAGTTGACAACTACCAATACAGTTTAATATCTGTGgtaagtattg ... ttccctgcagATGTTCATCATTCTGTCCTGCACAATTGCGGTAGGAACCAACCTCAGCCAA
EST: gi|22010955|gb|BQ795989.1|BQ795989
EST:     GGTTGACAAATAAGAGAGTTGACAACTACCAATACAGTTTAATATCTGTG                         ATGTTCATCATTCTGTCCTGCACAATTGCGGTAGGAACCAACCTCAGCCAA
genomic: GGTTGACAAATAAGAGAGTTGACAACTACCAATACAGTTTAATATCTGTGgtaagtattg ... ttccctgcagATGTTCATCATTCTGTCCTGCACAATTGCGGTAGGAACCAACCTCAGCCAA
EST: gi|46918320|gb|CN547649.1|CN547649
EST:     GGTTGACAAATAAGAGAGTTGACAACTACCAATACAGTTTAATATCTGTG                         ATGTTCATCATTCTGTCCTGCACAATTGCGGTAGGAACCAACCTCAGCCAA
genomic: GGTTGACAAATAAGAGAGTTGACAACTACCAATACAGTTTAATATCTGTGgtaagtattg ... ttccctgcagATGTTCATCATTCTGTCCTGCACAATTGCGGTAGGAACCAACCTCAGCCAA
EST: gi|71886650|gb|DT035705.1|DT035705
EST:     GTTGGACAAATAACAGAGTTGACAACTACCAATACAGTTTAATATCTGTG                         ATGTTCATCATTCTGTCCTG
genomic: GTTG-ACAAATAAGAGAGTTGACAACTACCAATACAGTTTAATATCTGTGgtaagtattg ... ttccctgcagATGTTCATCATTCTGTCCTG
EST: gi|22013082|gb|BQ798116.1|BQ798116
EST:     GGTTGACAAATAAGAGAGTTGACAACTACCAATACAGTTTAATATCTGTG                         ATGTTCATCATTCTGTCCTGCACAATTGCGGTAGGAACCAACCTCAGCCAA
genomic: GGTTGACAAATAAGAGAGTTGACAACTACCAATACAGTTTAATATCTGTGgtaagtattg ... ttccctgcagATGTTCATCATTCTGTCCTGCACAATTGCGGTAGGAACCAACCTCAGCCAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCCAGTGCAGGCTGCATCTCTGCTGTTATTAGGACCCTTTCTGGACTATTGGTTGACAAATAAGAGAGTTGACAACTACCAATACAGTTTAATATCTGTGgtaagtattgcatcaaggtggcatgcgcatgagttgatcatctatgaagcctaacttgtttgctttgcatgcatgtgtcacatgggaaaagtttagcttg

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gggaaaa