Sequence
atgc intronic sequence ATGC exonic sequenceATCAAAGGCTGCAAAACCAAGTAACATTCTTCAAACCAGTGATTGTCTTGGAGCTGAAACACTCATTAAGTTACTGAAGAATTATTCAAGAAGCCATGAGgtacttaatagtatttctttcctttcataactatctatttccttattcctgtgatatgtattaaatatacacttgtctttctgcattgtgtgttgtctgt...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0005g05860.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA10G24060.1 (Glycine max), 5'ss of exon 5
ATCAAAGGCTGCAAAACCAAGTAACATTCTTCAAACC--AGTGATTGTCTTGGAGCTGAAACACTCATTAAGTTACTGAAGAATTATTCAAGAAGCCATGAGgta-cttaatagtatttct-------ttcctttcataact-atctatttccttat------tcctgtgatatgtattaaatatacacttgtctttctgcattgtgtgttgtctgt-----------------------------------------------------------
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CTTCAAG--TGCAGCACACAACAACAAAGATCAAACTTAAGTGATTGTCTTGGTGCTGATACTCTCATCAAATTGTTGAAAAATTACTCAAGAAGTCATGAGgtagcagaactgttttggaacacaaataccccctgtaattcatgtagtttctcttctagtcttatgtgatatttgttgcttatccattaattttgttatttctgtaattgtctgtttgattttagatcattcattgaaggtcttcacatttattttgcttccttgtattgatag
upper sequence: Vv07s0005g05860.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA20G17960.1 (Glycine max), 5'ss of exon 5
ATCAAAGGCTGCAAAACCAAGTAACATTCTTCAAACC--AGTGATTGTCTTGGAGCTGAAACACTCATTAAGTTACTGAAGAATTATTCAAGAAGCCATGAGgta-cttaatagtatttc---tttcctttcataactatctatttccttattcctgtgatatgtattaaatatacacttg-tctttctgcattgtgtgttgtctgt
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CTTCAAG--TGCAGCACACAACAACAAAGATCAAACTTAAGTGATTGTCTTGGTGCTGATACTCTCCTCAAATTGTTGAAGAATTACTCAAGAAGTCATGAGgtaacagaattgtttaacacagcccccctccccaccccccaccccccccccccccccctaag-gccgtgtatataccaaatctttttccatccaagactgt----Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|33403593|gb|CF209220.1|CF209220EST: GCGCTGAAACACTCATTAAGTTACTGAAGAATTATTCAAGAAGCCATGAG ATCAAGACGTCAATTACAGTGGGTATTATTGGATTGCCTAATGTTGGTAAA
genomic: GAGCTGAAACACTCATTAAGTTACTGAAGAATTATTCAAGAAGCCATGAGgtacttaata ... ttctttgcagATCAAGACGTCAATTACAGTGGGTATTATTGGATTGCCTAATGTTGGTAAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATCAAAGGCTGCAAAACCAAGTAACATTCTTCAAACCAGTGATTGTCTTGGAGCTGAAACACTCATTAAGTTACTGAAGAATTATTCAAGAAGCCATGAGgtacttaatagtatttctttcctttcataactatctatttccttattcctgtgatatgtattaaatatacacttgtctttctgcattgtgtgttgtctgt
- - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC