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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CACCCAGTGCATCCTGAAATACTTGCAAGTGGGAGTTTAGATCATGAAGTTCGTATATGGGATGCAAATACTGCGGAGTGTATAGGATCTCGTGATTTCTgtaatttctattttcattctcattccggttgctttgttgatgcaatccagacacacacaaacacaaacacacactaagcatttagttatgccttatgtggtgaatttgatctctatctgttttcaccag

Basic information

species Vitis vinifera
transcript Vv07s0005g04630.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0005g04630.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G007229_T01 (Zea mays), 5'ss of exon 5
CACCCAGTGCATCCTGAAATACTTGCAAGTGGGAGTTTAGATCATGAAGTTCGTATATGGGATGCAAATACTGCGGAGTGTATAGGATCTCGTGATTTCTgtaatttctattttcattctcattccggttgctttgttgatgcaatccagacacacacaaacacaaacacacactaagcatttagttatgccttatgtggtgaatttgatctctatctgttttcaccag
|| ||| | ||| |||| || || || || || ||||| ||||||||||||||| |||||||||| |||||| | || ||||| || || |  || ||| |||||||         ||||||    |  |||||       ||| || |  || |  |||     |  |||   |||    ||  | |||   | || ||                             
CATCCATTACATTCTGACATCCTGGCTAGCGGAAGTTTGGATCATGAAGTTCGTCTATGGGATGCTAATACTTCAGACTGTATTGGGTCACAAGACTTCCgtaattt---------ttctcagaa-gactgctt-------gcattctattcatagtcaattttgagaacaatgtaacttatttttgatgttct-tggggcag--------------------------

upper sequence: Vv07s0005g04630.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: AT1G04140.2 (Arabidopsis thaliana), 5'ss of exon 5
CACCCAGTGCATCCTGAAATACTTGCAAGTGGGAGTTTAGATCATGAAGTTCGTATATGGGATGCAAATACTGCGGAGTGTATAGGATCTCGTGATTTCTgtaatttctattttcattctcattccggttgctttgttgatgcaatccagacacacacaaacacaaacacacactaagcatttagttatgccttatgtggtgaatttgatctctatctgttttcaccag
|||||    ||  | |||||| |||| ||||| |||||||||||||| || ||  ||||| ||||||| |||| |||||||||  || ||| ||||||||||||   | |    || | |  ||  |  |  ||  |        || |      || | |   ||   |   |    |  ||  |  | |  ||    |                             
CACCCGCGCCACTCAGAAATAGTTGCTAGTGGAAGTTTAGATCATGAGGTGCGCTTATGGAATGCAAAAACTGGGGAGTGTATCAGAACTCATGATTTCTgtaagcgccaag--caatattcttttgtctttttcctct------tctactttttcatataattaactccgtcc----ctcttcctccttcactaaacag-----------------------------