Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATAGTACCAATGAAATACAATCCAAGAGATGAAAATTCGATCAAGGCAGTAATGGCGAAAGCTAACGTTGTTCTCAATCTTATTGgtattgaatttcaccacctgtctcttttatgtattaactctaaatattggaggcaatgaagtgtcttgtacttattaactatccttgtgggcag

Basic information

species Vitis vinifera
transcript Vv07s0005g04440.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0005g04440.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA13G18950.1 (Glycine max), 5'ss of exon 5
ATAGTACCAATGAAATACAATCCAAGAGATGAAAATTCGATCAAGGCAGTAATGGCGAAAGCTAACGTTGTTCTCAATCTTATTGgtattgaatttcaccacctgtctcttttatgtattaactctaaatattggaggcaatgaagtgtcttgtacttatta-actatccttgtgggcag---------------
|| ||||| ||||||||||||||||| ||||||| |||  | || || || ||||| || || || |||||| |||| |||||||||||  |  ||  |      | |      |  | |   || | || ||| ||   | ||    |  |||    || | ||  || || ||                    
ATTGTACCCATGAAATACAATCCAAGGGATGAAAGTTCAGTAAAAGCTGTGATGGCTAAGGCCAATGTTGTTATCAACCTTATTGgtatacatcttgtcttgtaattttacgctttgaatgtttcaatatgttgaagtatacgactctttgtgtttcaatcacacactcattctgccttatttggttgttggcag

upper sequence: Vv07s0005g04440.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: AT2G20360.1 (Arabidopsis thaliana), 5'ss of exon 5
ATAGTACCAATGAAATACAATCCAAGAGATGAAAATTCGATCAAGGCAGTAATGGCGAAAGCTAACGTTGTTCTCAATCTTATTGgtattgaatttcaccacctgtctc--ttttatgtattaactctaaat--attggaggcaatgaagtgtcttgtact-tattaactatccttgtgggcag----------------
 | |||||||||||||   |||||||||||||| | ||||| ||||| || ||||| || ||||| || ||| ||||||| ||||||  |  ||||      || |||   |||| | ||  || | ||  |  | |  |  | || ||     | | ||| |  |  | ||  | |  |  |                 
GTGGTACCAATGAAATTTGATCCAAGAGATGAAGACTCGATTAAGGCTGTCATGGCCAAGGCTAATGTCGTTATCAATCTAATTGgtgat--attttgttgtctatcttaattttttctagcaagtatagttaaacttaaaaccattaaaaaagtagcactgttctttccattttggatgatatttattctactcctcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161719785|gb|FC066692.1|FC066692
EST:     TTCGATCAAGGCAGTAATGGCGAAAGCTAACGTTGTTCTCAATCTTATTG                         GAAGGGAATATGAGACAAGAAATTATAGCTTTGAGGAAGTGAACCATCATA
genomic: TTCGATCAAGGCAGTAATGGCGAAAGCTAACGTTGTTCTCAATCTTATTGgtattgaatt ... ttgtgggcagGAAGGGAATATGAGACAAGAAATTATAGCTTTGAGGAAGTGAACCATCATA
EST: gi|161720302|gb|FC071155.1|FC071155
EST:     TTCGATCAAGGCAGTAATGGCGAAAGCTAACGTTGTTCTCAATCTTATTG                         GAAGGGAATATGAGACAAGAAATTATAGCTTTGAGGAAGTGAACCATCATA
genomic: TTCGATCAAGGCAGTAATGGCGAAAGCTAACGTTGTTCTCAATCTTATTGgtattgaatt ... ttgtgggcagGAAGGGAATATGAGACAAGAAATTATAGCTTTGAGGAAGTGAACCATCATA
EST: gi|161719288|gb|FC068264.1|FC068264
EST:     TTCGATCAAGGCAGTAATGGCGAAAGCTAACGTTGTTCTCAATCTTATTG                         GAAGGGAATATGAGACAAGAAATTATAGCTTTGAGGAAGTGAACCATCATA
genomic: TTCGATCAAGGCAGTAATGGCGAAAGCTAACGTTGTTCTCAATCTTATTGgtattgaatt ... ttgtgggcagGAAGGGAATATGAGACAAGAAATTATAGCTTTGAGGAAGTGAACCATCATA
EST: gi|77580795|gb|DV219305.1|DV219305
EST:     TTCGATCAAGGCAGTAATGGCGAAAGCTAACGTTGTTCTCAATCTTATTG                         GAAGGGAATATGAGACAAGAAATTATAGCTTTGAGGAAGTGAACCATCATA
genomic: TTCGATCAAGGCAGTAATGGCGAAAGCTAACGTTGTTCTCAATCTTATTGgtattgaatt ... ttgtgggcagGAAGGGAATATGAGACAAGAAATTATAGCTTTGAGGAAGTGAACCATCATA
EST: gi|110424142|gb|EC990498.1|EC990498
EST:     TTCGATCAAGGCAGTAATGGCGAAAGCTAACGTTGTTCTCAATCTTATTG                         GAAGGGAATATGAGACAAGAAATTATAGCTTTGAGGAAGTGAACCATCATA
genomic: TTCGATCAAGGCAGTAATGGCGAAAGCTAACGTTGTTCTCAATCTTATTGgtattgaatt ... ttgtgggcagGAAGGGAATATGAGACAAGAAATTATAGCTTTGAGGAAGTGAACCATCATA
EST: gi|71864241|gb|DT013296.1|DT013296
EST:     TTCGATCAAGGCAGTAATGGCGAAAGCTAACGTTGTTCTCAATCTTATTG                         GAAGGGAATATGAGACAAGAAATTATAGCTTTGAGGAAGTGTACCATC
genomic: TTCGATCAAGGCAGTAATGGCGAAAGCTAACGTTGTTCTCAATCTTATTGgtattgaatt ... ttgtgggcagGAAGGGAATATGAGACAAGAAATTATAGCTTTGAGGAAGTGAACCATC
EST: gi|161718481|gb|FC066331.1|FC066331
EST:     TTCGATCAAGGCAGTAATGGCGAAAGCTAACGTTGTTCTCAATCTTATTG                         GAAGGGAATATGAGACAAGAAATTATAGCTTTGAGGAAGTGAACCATCATA
genomic: TTCGATCAAGGCAGTAATGGCGAAAGCTAACGTTGTTCTCAATCTTATTGgtattgaatt ... ttgtgggcagGAAGGGAATATGAGACAAGAAATTATAGCTTTGAGGAAGTGAACCATCATA