1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GTTTACTTGTGTGAAAAGATGTCACTTGTCAATGAGATGTACTTTGCTATCACTCTGGATCGTTCATCTGCGGGTCCAgtacgttcccaaactcagttttggatctttgtgtctgcttttgtgaatgatttgttttatttcagataggaagtttaaattatatttcccactctttctg...
species | Vitis vinifera |
transcript | Vv07s0005g03790.t01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TCAATGAGATGTACTTTGCTATCACTCTGGATCGTTCATCTGCGGGTCCA ATCATAATTGCATGTAGAAAGGGAGGAACCAGTATTGAAGACCTTGCAGAGEST: gi|110397988|gb|EC964029.1|EC964029
genomic: TCAATGAGATGTACTTTGCTATCACTCTGGATCGTTCATCTGCGGGTCCAgtacgttccc ... tgctctccagATCATAATTGCATGTAGAAAGGGAGGAACCAGCATCGAAGACCTTGCAGAG
EST: TCAATGAGATGTACTTTGCTATCACTCTGGATCGTTCATCTGCGGGTCCA ATCATAATTGCATGTAGAAAGGGAGGAACCAGTATTGAAGACCTTGCAGAGEST: gi|30305880|gb|CB982674.1|CB982674
genomic: TCAATGAGATGTACTTTGCTATCACTCTGGATCGTTCATCTGCGGGTCCAgtacgttccc ... tgctctccagATCATAATTGCATGTAGAAAGGGAGGAACCAGCATCGAAGACCTTGCAGAG
EST: TCAATGAGATGTACTTTGCTATCACTCTGGATCGTTCATCTGCGGGTCCA ATCATAATTGCATGTAGAAAGGGAGGAACCAGTATCGAAGACCTTGCAGAGEST: gi|110733074|gb|EE108915.1|EE108915
genomic: TCAATGAGATGTACTTTGCTATCACTCTGGATCGTTCATCTGCGGGTCCAgtacgttccc ... tgctctccagATCATAATTGCATGTAGAAAGGGAGGAACCAGCATCGAAGACCTTGCAGAG
EST: TCAATGAGATGTACTTTGCTATCACTCTGGATCGTTCATCTGCGGGTCCA ATCATAATTGCATGTAGAAAGGGAGGAACCAGTATTGAAGACCTTGCAGAGEST: gi|161716900|gb|FC064979.1|FC064979
genomic: TCAATGAGATGTACTTTGCTATCACTCTGGATCGTTCATCTGCGGGTCCAgtacgttccc ... tgctctccagATCATAATTGCATGTAGAAAGGGAGGAACCAGCATCGAAGACCTTGCAGAG
EST: TCAATGAGATGTACTTTGCTATCACTCTGGATCGTTCATCTGCGGGTCCA ATCATAATTGCATGTAGAAAGGGAGGAACCAGTATTGAAGACCTTGCAGAGEST: gi|110688710|gb|EE067574.1|EE067574
genomic: TCAATGAGATGTACTTTGCTATCACTCTGGATCGTTCATCTGCGGGTCCAgtacgttccc ... tgctctccagATCATAATTGCATGTAGAAAGGGAGGAACCAGCATCGAAGACCTTGCAGAG
EST: TCAATGAGATGTACTTTGCTATCACTCTGGATCGTTCATCTGCGGGTCCA ATCATAATTGCATGTAGAAAGGGAGGAACCAGTATCGAAGACCTTGCAGAGEST: gi|30130655|gb|CB915994.1|CB915994
genomic: TCAATGAGATGTACTTTGCTATCACTCTGGATCGTTCATCTGCGGGTCCAgtacgttccc ... tgctctccagATCATAATTGCATGTAGAAAGGGAGGAACCAGCATCGAAGACCTTGCAGAG
EST: TCAATGAGATGTACTTTGCTATCACTCTGGATCGTTCATCTGCGGGTCCA ATCATAATTGCATGTAGAAAGGGAGGAACCAGTATTGAAGACCTTGCAGEST: gi|161713591|gb|FC062524.1|FC062524
genomic: TCAATGAGATGTACTTTGCTATCACTCTGGATCGTTCATCTGCGGGTCCAgtacgttccc ... tgctctccagATCATAATTGCATGTAGAAAGGGAGGAACCAGCATCGAAGACCTTGCAG
EST: TCAATGAGATGTACTTTGCTATCACTCTGGATCGTTCATCTGCGGGTCCA ATCATAATTGCATGTAGAAAGGGAGGAACCAGTATTGAAGACCTTGCAGAG
genomic: TCAATGAGATGTACTTTGCTATCACTCTGGATCGTTCATCTGCGGGTCCAgtacgttccc ... tgctctccagATCATAATTGCATGTAGAAAGGGAGGAACCAGCATCGAAGACCTTGCAGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTTACTTGTGTGAAAAGATGTCACTTGTCAATGAGATGTACTTTGCTATCACTCTGGATCGTTCATCTGCGGGTCCAgtacgttcccaaactcagttttggatctttgtgtctgcttttgtgaatgatttgttttatttcagataggaagtttaaattatatttcccactctttctg
- - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gataggaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cccactc