1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GATTAAGAAGATGAAAATCAAGAATTGCTACTTCCCTCTCTTTGTATCACCTGGTGTTTTACAAAAGGAGAAGGATCACATTGAGGGTTTCGCTCCAGAGgtaagatttttaatgcttttcatatgataggattaaagtgaattctgtttactaattaaggtattgattttgaattcaacagaatgtgcctcttgaaatt...
species | Vitis vinifera |
transcript | Vv07s0005g02620.t01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CTGGTGTTTTACAAAAGGAGAAGGATCACATTGAGGGTTTCGCTCCAGAG GTCGCTTGGGTAACAAAATCTGGACAATCAGATTTGGAAGTGCCCATTGCTEST: gi|161715595|gb|FC068351.1|FC068351
genomic: CTGGTGTTTTACAAAAGGAGAAGGATCACATTGAGGGTTTCGCTCCAGAGgtaagatttt ... tttttcctagGTCGCTTGGGTAACAAAATCTGGACAATCAGATTTGGAAGTGCCTATTGCT
EST: CTGGTGTTTTACAAAAGGAGAAGGATCACATTGAGGGTTTCGCTCCAGAG GTCGCTTGGGTAACAAAATCTGGACAATCAGATTTGGAAGTGCCTATTGCTEST: gi|30306282|gb|CB983076.1|CB983076
genomic: CTGGTGTTTTACAAAAGGAGAAGGATCACATTGAGGGTTTCGCTCCAGAGgtaagatttt ... tttttcctagGTCGCTTGGGTAACAAAATCTGGACAATCAGATTTGGAAGTGCCTATTGCT
EST: CTGGGGTTTTACAAAAGGAGAAGGATCACATTGAGGGTTTCGCTCCAGAG GTCGCTTGGGTAACAAAATCTGGACAATCAGATTTGGAAGTGCCTATTGCTEST: gi|110712760|gb|EE088090.1|EE088090
genomic: CTGGTGTTTTACAAAAGGAGAAGGATCACATTGAGGGTTTCGCTCCAGAGgtaagatttt ... tttttcctagGTCGCTTGGGTAACAAAATCTGGACAATCAGATTTGGAAGTGCCTATTGCT
EST: CTGGTGTTTTACAAAAGGAGAAGGATCACATTGAGGGTTTCGCTCCAGAG GTCGCTTGGGTAACAAAATCTGGACAATCAGATTTGGAAGTGCCTATTGCTEST: gi|29784140|gb|CB344515.2|CB344515
genomic: CTGGTGTTTTACAAAAGGAGAAGGATCACATTGAGGGTTTCGCTCCAGAGgtaagatttt ... tttttcctagGTCGCTTGGGTAACAAAATCTGGACAATCAGATTTGGAAGTGCCTATTGCT
EST: CTGGTGTTTTACAAAAGGAGAAGGATCACATTGAGGGTTTCGCTCCAGAG GTCGCTTGGGTAACAAAATCTGGACAATCAGATTTGGAAGTGCCTATTGCTEST: gi|161708997|gb|FC058789.1|FC058789
genomic: CTGGTGTTTTACAAAAGGAGAAGGATCACATTGAGGGTTTCGCTCCAGAGgtaagatttt ... tttttcctagGTCGCTTGGGTAACAAAATCTGGACAATCAGATTTGGAAGTGCCTATTGCT
EST: CTGGTGTTTTACAAAAGGAGAAGGATCACATTGAGGGTTTCGCTCCAGAG GTCGCTTGGGTAACAAAATCTGGACAATCAGATTTGGAAGTGCCTATTGCTEST: gi|37190730|gb|CF610079.1|CF610079
genomic: CTGGTGTTTTACAAAAGGAGAAGGATCACATTGAGGGTTTCGCTCCAGAGgtaagatttt ... tttttcctagGTCGCTTGGGTAACAAAATCTGGACAATCAGATTTGGAAGTGCCTATTGCT
EST: CTGGTGTTTTACAAAAGGAGAAGGATCACATTGAGGGTTTCGCTCCAGAG GTCGCTTGGGTAACAAAATCTGGACAATCAGATTTGGAAGTGCCTATTGCTEST: gi|110713336|gb|EE089170.1|EE089170
genomic: CTGGTGTTTTACAAAAGGAGAAGGATCACATTGAGGGTTTCGCTCCAGAGgtaagatttt ... tttttcctagGTCGCTTGGGTAACAAAATCTGGACAATCAGATTTGGAAGTGCCTATTGCT
EST: CTGGTGTTTTACAAAAGGAGAAGGATCACATTGAGGGTTTCGCTCCAGAG GTCGCTTGGGTAACAAAATCTGGACAATCAGATTTGGAAGTGCCTATTGCTEST: gi|110712013|gb|EE089150.1|EE089150
genomic: CTGGTGTTTTACAAAAGGAGAAGGATCACATTGAGGGTTTCGCTCCAGAGgtaagatttt ... tttttcctagGTCGCTTGGGTAACAAAATCTGGACAATCAGATTTGGAAGTGCCTATTGCT
EST: CTGGTGTTTTACAAAAGGAGAAGGATCACATTGAGGGTTTCGCTCCAGAG GTCGCTCGGGTAACAAAATCTGGACAATCAGATTTGGAAGTGCCTATTGCT
genomic: CTGGTGTTTTACAAAAGGAGAAGGATCACATTGAGGGTTTCGCTCCAGAGgtaagatttt ... tttttcctagGTCGCTTGGGTAACAAAATCTGGACAATCAGATTTGGAAGTGCCTATTGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATTAAGAAGATGAAAATCAAGAATTGCTACTTCCCTCTCTTTGTATCACCTGGTGTTTTACAAAAGGAGAAGGATCACATTGAGGGTTTCGCTCCAGAGgtaagatttttaatgcttttcatatgataggattaaagtgaattctgtttactaattaaggtattgattttgaattcaacagaatgtgcctcttgaaatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aagtgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aacagaa