Sequence
atgc intronic sequence ATGC exonic sequenceTTCATATATGATCTACCTACTAGGCTTGGAAAATGTATTAAATCCGAAGCTTATGCTGATGCAGTCAGGTTTTATACTGGAGCCATGCCGATTTTTGAGgtgactgtcttcttacctgttccttcagtggctgaagcaatttatctttgtttgttttcttgacatgatatcattgttatcaacttcatattgagaattctactcattagtgacatgttctttttttattcaatag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0005g01440.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA10G01660.1 (Glycine max), 5'ss of exon 5
TTCATATATGATCTACCTACTAGGCTTGGAAAATGTATTAAATCCGAAGCTTATGCTGATGCAGTCAGGTTTTATACTGGAGCCATGCCGATTTTTGAGgtgactgtcttcttacctgttccttcagtggctgaagcaatttatctttgtttgttttcttgacatgatatcattgttatcaacttcatattgagaattctactcattagtgacatgttctttttttattcaatag
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TTCATATATGACCTACCCGATAGACTAAGCAAGTGCATCAAGTCGGAGGCCTATGCAGATGCAGTCAGGTTTTACATTGGAGCAATGCCAATTTTTAAGgttgtggttggcttatatggttt--------ctgattcaatc---ccttgattacttt-taaacacaacgt-attaatccaggtcttagatgaattatcttgttt----------tcctccctctttatcag----
upper sequence: Vv07s0005g01440.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA02G01610.1 (Glycine max), 5'ss of exon 5
TTCATATATGATCTACCTACTAGGCTTGGAAAATGTATTAAATCCGAAGCTTATGCTGATGCAGTCAGGTTTTATACTGGAGCCATGCCGATTTTTGAGgtgactgtcttcttacctgttccttcagtggctgaagcaatttatctttgtttgttttcttgacatgatatcattgttatcaacttcatattgagaattctactcattagtgacatgttctttttttattcaatag
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TTCATATATGATCTCCCCGATAGACTAGGCAAGTGCATCAAGTCGGAGGCCTATGCAGATGCAGTCAGGTTTTACATTGGAGCAATGCCAATTTTTAAGgttgtggttggcttatatggttt--------ctgattccatc---ccttgattacttt-taaacacaacat-actaatccaggtctcagatgaaatatcttgttt----------tcccctctctttactag----Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71855917|gb|DT004972.1|DT004972EST: ATGCAGTCAGGTTTTATACTGGAGCCATGCCGATTTTTGAG GCATATGGGGACTCATCATTCCAGGATTGTAAGAGAGCATCTGAAGAAGCA
genomic: ATGCAGTCAGGTTTTATACTGGAGCCATGCCGATTTTTGAGgtgactgtct ... tattcaatagGCATATGGGGACTCATCATTCCAGGATTGTAAGAGAGCATCTGAAGAAGCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTCATATATGATCTACCTACTAGGCTTGGAAAATGTATTAAATCCGAAGCTTATGCTGATGCAGTCAGGTTTTATACTGGAGCCATGCCGATTTTTGAGgtgactgtcttcttacctgttccttcagtggctgaagcaatttatctttgtttgttttcttgacatgatatcattgttatcaacttcatattgagaattctactcattagtgacatgttctttttttattcaatag
- - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT