1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
CTACATTCAAGTAAATGGCCAGACCCTTGGGGCTGATGATTCTGACAATACATTTGGATGGGATAACAAGCATGTTGGAGCAAGGATTCTTCTCTCTAAGgtcccattctcatctcatcactgcttttcaatttctttttcttagaacttcaatcatgccttttttcatcaattttttcag
species | Vitis vinifera |
transcript | Vv07s0005g00740.t01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CATTTGGATGGGATAACAAGCATGTTGGAGCAAGGATTCTTCTCTCTAAG GCATTCCTTCTCCAAAGGGTGCAGTCCCTCCATGATTACAAAGGTCATGCAEST: gi|161715260|gb|FC065809.1|FC065809
genomic: CATTTGGATGGGATAACAAGCATGTTGGAGCAAGGATTCTTCTCTCTAAGgtcccattct ... attttttcagGCATTCCTTCTCCAAAGGGTGCAGTCCCTCCATGATTACAAAGGTCATGCA
EST: CATTTGGATGGGATAACAAGCATGTTGGAGCAAGGATTCTTCTCTCTAAG GCATTCCTTCTCCAAAGGGTGCAGTCCCTCCATGATTACAAAGGTCATGCAEST: gi|156739183|gb|EV243304.1|EV243304
genomic: CATTTGGATGGGATAACAAGCATGTTGGAGCAAGGATTCTTCTCTCTAAGgtcccattct ... attttttcagGCATTCCTTCTCCAAAGGGTGCAGTCCCTCCATGATTACAAAGGTCATGCA
EST: CATTTGGATGGGATAACAAGCATGTTGGAGCAAGGATTCTTCTCTCTAAG GCATTCCTTCTCCAAAGGGTGCAGTCCCTCCATGATTACAAAGGTCATGCAEST: gi|110687298|gb|EE064584.1|EE064584
genomic: CATTTGGATGGGATAACAAGCATGTTGGAGCAAGGATTCTTCTCTCTAAGgtcccattct ... attttttcagGCATTCCTTCTCCAAAGGGTGCAGTCCCTCCATGATTACAAAGGTCATGCA
EST: CATTTGGATGGGATAACAAGCATGTTGGAGCAAGGATTCTTCTCTCTAAG GCATTCCTTCTCCAAAGGGTGCAGTCCCTCCATGATTACAAAGGTCATGCAEST: gi|71874084|gb|DT023139.1|DT023139
genomic: CATTTGGATGGGATAACAAGCATGTTGGAGCAAGGATTCTTCTCTCTAAGgtcccattct ... attttttcagGCATTCCTTCTCCAAAGGGTGCAGTCCCTCCATGATTACAAAGGTCATGCA
EST: CATTTGGATGGGATAACAAGCATGTTGGAGCAAGGATTCTTCTCTCTAAG GCATTCCTTCTCCAAAGGGTGCAGTCCCTCCATGATTACAAAGGTCATGCAEST: gi|110701944|gb|EE080092.1|EE080092
genomic: CATTTGGATGGGATAACAAGCATGTTGGAGCAAGGATTCTTCTCTCTAAGgtcccattct ... attttttcagGCATTCCTTCTCCAAAGGGTGCAGTCCCTCCATGATTACAAAGGTCATGCA
EST: CATTTGGATGGGATAACAAGCATGTTGGAGCAAGGATTCTTCTCTCTAAG GCATTCCTTCTCCAAAGGGTGCAGTCCCTCCATGATTACAAAGGTCATGCAEST: gi|71877408|gb|DT026463.1|DT026463
genomic: CATTTGGATGGGATAACAAGCATGTTGGAGCAAGGATTCTTCTCTCTAAGgtcccattct ... attttttcagGCATTCCTTCTCCAAAGGGTGCAGTCCCTCCATGATTACAAAGGTCATGCA
EST: CATTTGGATGGGATAACAAGCATGTTGGAGCAAGGATTCTTCTCTCTAAG GCATTCCTTCTCCAAAGGGTGCAGTCCCTCCATGATTACAAAGGTCATGC
genomic: CATTTGGATGGGATAACAAGCATGTTGGAGCAAGGATTCTTCTCTCTAAGgtcccattct ... attttttcagGCATTCCTTCTCCAAAGGGTGCAGTCCCTCCATGATTACAAAGGTCATGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTACATTCAAGTAAATGGCCAGACCCTTGGGGCTGATGATTCTGACAATACATTTGGATGGGATAACAAGCATGTTGGAGCAAGGATTCTTCTCTCTAAGgtcccattctcatctcatcactgcttttcaatttctttttcttagaacttcaatcatgccttttttcatcaattttttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG