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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTGTATGGAGAGTCCATGGGTGGAGCAGTGGCCCTACTACTTCATAAAAAGGACCCCAATTTCTGGAATGGTGCAGTTCTGGTTGCACCCATGTGTAAGgtaaatgcaagatgattgtgtgatcaactcccaaattccacaacatgctttctattggttggaatttggaaaacatcttttttttccagctttgctaccaagaaattgaaccctgggtattcctaattaatgtatgaaaatggtcag

Basic information

species Vitis vinifera
transcript Vv07s0005g00510.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0005g00510.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA03G37290.1 (Glycine max), 5'ss of exon 4
CTTGTATGGAGAGTCCATGGGTGGAGCAGTGGCCCTACTACTTCATAAAAAGGACCCCAATTTCTGGAATGGTGCAGTTCTGGTTGCACCCATGTGTAAGgta--aatgcaagatgattgtgtgatcaactcccaaattccacaacatgctttctattggttggaatt-tggaaaacatcttttttttccagctttgcta--ccaagaaattgaacc-ctgggtattcctaattaatgtatgaaaatggtcag-------------------------
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CTTGTATGGAGAGTCCATGGGAGGAGCAGTGAGCCTTCTTTTACATAAAAAGGACCCTTCATTCTGGGACGGTGCAGTTCTCGTCGCACCCATGTGTAAGgtatgaactaaaaataataataaaatttttaaacaatatttttagtctaggaaa-ataaatcatactaatggaataaaaataatttgagtaactctattaattccattaattgaatagttactttttcctacgtaaaaattaaacatggcttattcaaatgttgaaacaataagccag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161707504|gb|FC057381.1|FC057381
EST:     AGGACCCCAATTTCTGGAATGGTGCAGTTCTGGTTGCACCCATGTGTAAG                         ATATCGGAGAAGGTGAAGCCACATCCTGTAGTGGTGAATAT
genomic: AGGACCCCAATTTCTGGAATGGTGCAGTTCTGGTTGCACCCATGTGTAAGgtaaatgcaa ... aaatggtcagATATCGGAGAAGGTGAAGCCACATCCTGTAGTTGTGAATAT
EST: gi|110423997|gb|EC990350.1|EC990350
EST:     AGGACCCCAATTTCTGGAATGGTGCAGTTCTGGTTGCACCCATGTGTAAG                         ATATCGGAGAAGGTGAAGCCACATCCTGTAGTTGTGAATATATTAACAAAA
genomic: AGGACCCCAATTTCTGGAATGGTGCAGTTCTGGTTGCACCCATGTGTAAGgtaaatgcaa ... aaatggtcagATATCGGAGAAGGTGAAGCCACATCCTGTAGTTGTGAATATATTAACAAAA