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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGGTGGAGCTTAAAAATGGAGAAACTTACAATGGGCATTTGGTTAACTGTGATACTTGGATGAACATTCATCTTCGGGAAGTTATCTGTACCTCAAAAgtaatcaactctttaattgactgttcttgtttgttgtttacttcttatttaccttgacagttcttgtttgctcttcaaattcatgtttcatccgatttaatgtag

Basic information

species Vitis vinifera
transcript Vv07s0005g00230.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0005g00230.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: LOC_Os01g15310.1 (Oryza sativa), 5'ss of exon 3
TTGGTGGAGCTTAAAAATGGAGAAACTTACAATGGGCATTTGGTTAACTGTGATACTTGGATGAACATTCATCTTCGGGAAGTTATCTGTACCTCAAAAgtaatcaactctttaattgactgttcttgtttgttgtttacttcttatttaccttgacagttcttgtttgctcttcaaattcatgtttcatccgatttaatgtag
 | ||||||||||| || || || || ||||| ||||| ||||| ||||| || || ||||||||||| || || ||||| ||||| || |||||||| || |         |    |||     | | |||| | ||     ||| |       | || |         | ||   |||   |    ||  |   ||      
CTCGTGGAGCTTAAGAACGGCGAGACGTACAACGGGCACTTGGTGAACTGCGACACGTGGATGAACATCCACCTCCGGGAGGTTATTTGCACCTCAAAGgtgaaatctcgcatccccgacccacttcgcttgtagatt-----ttagtggggacaaaagattagtggcattgtttggatttggggaaaatagggagtagccatt

upper sequence: Vv07s0005g00230.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G038606_T02 (Zea mays), 5'ss of exon 3
TTGGTGGAGCTTAAAAATGGAGAAACTTACAATGGGCATTTGGTTAACTGTGATACTTGGATGAACATTCATCTTCGGGAAGTTATCTGTACCTCAAAAgtaatcaactctttaa--ttgactgttcttgtttgttgtt-tacttcttatttaccttgacagttc--ttgtttgctcttcaaattcatgtttcatccgatttaatgtag
 | |||||||| || ||||| || || ||||| |||||| |||| || || || || ||||||||||| |||||| |||| ||||| || |||||||| || |  ||     |    |||| |    ||||     | | || ||   |      | |  |  |    ||| || | ||    |  || | | | ||||          
CTCGTGGAGCTGAAGAATGGTGAGACATACAACGGGCATCTGGTCAATTGCGACACGTGGATGAACATCCATCTTAGGGAGGTTATTTGCACCTCAAAGgtgaaaaatctggtgcccttgattcacattgtgaaaggctctagttagcaaaagattagttaagtgcactgtctgatttttgggtgaatctcttacccga----------

upper sequence: Vv07s0005g00230.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA10G02380.1 (Glycine max), 5'ss of exon 3
TTGGTGGAGCTTAAAAATGGAGAAACTTACAATGGGCATTTGGTTAACTGTGATACTTGGATGAACATTCATCTTCGGGAAGTTATCTGTACCTCAAAAgtaatcaactctttaattgactgttcttgtttgttgtttacttcttat-ttaccttgacagttcttgtttgctctt-caaattcatgtttcatccgattt----aatgtag
 | ||||| || |||||||| || ||||| || ||||| |||||||| |||||||| ||||||||||||||||| || ||||| || |||||||| |||||||  | || |||   | ||||||||    ||   |     ||  || ||  |||  ||  | |   |  || || ||| || |  |   ||  ||  |    |||  ||
CTAGTGGAACTGAAAAATGGGGAGACTTATAACGGGCACTTGGTTAATTGTGATACATGGATGAACATTCATCTCCGAGAAGTCATTTGTACCTCTAAAgtaacgatcttttt---tcactgttctc-cctgcattcactctcagatattgtcttctcatatgtgaatgtctgttacaacttaacttacaatttgaaattggcaattcag

upper sequence: Vv07s0005g00230.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA02G17430.2 (Glycine max), 5'ss of exon 3
TTGGTGGAGCTTAAAAATGGAGAAACTTACAATGGGCATTTGGTTAACTGTGATACTTGGATGAACATTCATCTTCGGGAAGTTATCTGTACCTCAAAAgtaatcaactctttaattgactgttcttgtttgttgt-ttacttcttatttacct---tgacagttcttgtttgctcttcaaattcatgtttcatccgatttaatgtag
 ||||||| || |||||||| || ||||| || ||||| |||||||| |||||||| ||||||||||| ||||| || ||||| || |||||||| |||||||  | || |||      || | | ||  |    | | |  | || | | |     ||  | |  |||||    ||| |  | ||  ||  |   |    |||  ||
CTGGTGGAACTGAAAAATGGGGAGACTTATAACGGGCACTTGGTTAATTGTGATACATGGATGAACATCCATCTCCGAGAAGTCATTTGTACCTCTAAAgtaacgatcttttttcactgctctccctgcattcaatctcagatattgtcttctcatgtgtgaatgtttgttgctacttaacttacaacttgaaattggc--aattcag

upper sequence: Vv07s0005g00230.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA19G39780.1 (Glycine max), 5'ss of exon 3
TTGGTGGAGCTTAAAAATGGAGAAACTTACAATGGGCATTTGGTTAACTGTGATACTTGGATGAACATTCATCTTCGGGAAGTTATCTGTACCTCAAAAgtaatcaactctttaattgactgttcttgtttgttgtttacttcttatttaccttgacagttcttgtttgctcttcaaattcatgtttcatccgatttaatgtag
|||||||| || |||||||| || || || || |||||||||||||| || ||||| ||||||||||| ||||| || ||||| || ||||| || ||||||||      ||||     |  | ||||||| |||||  ||| | ||||   |     |     ||||| | |   ||||     |  |               
TTGGTGGAACTGAAAAATGGGGAGACATATAACGGGCATTTGGTTAATTGCGATACATGGATGAACATCCATCTCCGAGAAGTCATTTGTACATCTAAAgtaatgttgcttttacgatcccttgcttgttttttgttgtcttgtaatttgattgtgatggaaaggtttgatttc--aattggcaatgtag--------------

upper sequence: Vv07s0005g00230.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA03G37170.2 (Glycine max), 5'ss of exon 3
TTGGTGGAGCTTAAAAATGGAGAAACTTACAATGGGCATTTGGTTAACTGTGATACTTGGATGAACATTCATCTTCGGGAAGTTATCTGTACCTCAAAAgtaatcaactctttaattgactgttcttgtttgttgtttacttcttatttacct-tgacagttcttgtttgctcttcaaattcatgtttcatccgatttaatgtag
|||||||| || |||||||| || || || || |||||||||||||| || || || ||||||||||| ||||| || ||||| || ||||| || ||||||||      ||||     |  | ||||||| |||||  ||| | ||||   | |||  |     | ||| | |  |  ||  |  |  |               
TTGGTGGAACTGAAAAATGGGGAGACATATAACGGGCATTTGGTTAATTGCGACACATGGATGAACATCCATCTGCGAGAAGTCATTTGTACATCTAAAgtaatgttgcttttacgatcccttgcttgttttttgttgtcttgtaatttggttatgatggaaaaggcttgatttaaattttggtaatgtag--------------

upper sequence: Vv07s0005g00230.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: AT5G27720.1 (Arabidopsis thaliana), 5'ss of exon 4
TTGGTGGAGCTTAAAAATGGAGAAACTTACAATGGGCATTTGGTTAACTGTGATACTTGGATGAACATTCATCTTCGGGAAGTTATCTGTACCTCAAAAgtaatca-actctttaattgactgttcttgtttgttgtttacttcttatttaccttgacagttcttgtttgctcttcaaattcatgtttcatccgatttaatgtag
 | ||||||||||| |||||||| || ||||||||||||||||| || |||||||||||||||||||| ||||| || ||||| || ||||| ||||| || |||  |   ||| ||    || |     |  |  |||  ||    ||     ||| | ||  |||        |  ||  || || |  |    ||| | |||
CTCGTGGAGCTTAAGAATGGAGAGACATACAATGGGCATTTGGTGAATTGTGATACTTGGATGAACATCCATCTGCGTGAAGTCATATGTACATCAAAGgttatcttatgttttcatatgttgatacaaat-atactttgtttagacttcgtgatgaaattttgtgtagctgacactcatatattttgctgcttgattactctag

upper sequence: Vv07s0005g00230.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: PP1S36_327V6.2 (Physcomitrella patens), 5'ss of exon 2
TTGGTGGAGCTTAAAAATGGAGAAACTTACAATGGGCATTTGGTTAACTGTGATACTTGGATGAACATTCATCTTCGGGAAGTTATCTGTACCTCAAAAgtaatcaactctttaattgactgttcttgtttgttgtttacttcttatttaccttgacagttcttgtttgctcttcaaattcatgtttcatccgatttaatgtag------------------------------------------------------------
 | || ||||| ||||||||||| ||||| || || ||||| || ||||||||||| |||||||||||||| || || |||||||| || |||||||| || || |  | |        ||    || | | ||      |||  | | | ||     || |  | |     |||| ||| || || ||   || ||||| |                                                              
CTTGTCGAGCTCAAAAATGGAGAGACTTATAACGGCCATTTAGTAAACTGTGATACATGGATGAACATTCACCTACGTGAAGTTATTTGCACCTCAAAGgtgattattttt-------gctaccattatctattagggttttcaaagtgatctgcctcgtcccagctgctggttcatatttatattgcagatgaattaatttgagttattcttcgattgttattgattccttttggttttataatggatatgtgggcattgtag

upper sequence: Vv07s0005g00230.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: EFJ10085 (Selaginella moellendorffii), 5'ss of exon 2
TTGGTGGAGCTTAAAAATGGAGAAACTTACAATGGGCATTTGGTTAACTGTGATACTTGGATGAACATTCATCTTCGGGAAGTTATCTGTACCTCAAAAgtaatcaactctttaattgactgttcttgtttgttgtttacttcttatttaccttgacagttcttgtttgctcttcaaattcatgtttcatccgatttaatgtag
        ||| || |||||||| |||||||||||||||||||| | ||| ||||  ||||||||||| ||||| || |||||||| || || || || |  |   |   |||      |  ||||| | |  |  || |||||                                                            
--------GCTCAAGAATGGAGAGACTTACAATGGGCATTTGGTGAGCTGCGATAGCTGGATGAACATCCATCTACGAGAAGTTATTTGCACTTCCAAGGCGAGTGATgttttctccttcctttcttttctcatcctt-cttctctccag------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349828814|gb|FQ419147.1|FQ419147
EST:     GTGATACTTGGATGAACATTCATCTTCGGGAAGTTATCTGTACCTCAAAA                         GATGGAGATAGGTTTTGGAGAATGCCTGAGTGCTACATCCGTGGGAATACA
genomic: GTGATACTTGGATGAACATTCATCTTCGGGAAGTTATCTGTACCTCAAAAgtaatcaact ... tttaatgtagGATGGAGATAGGTTTTGGAGAATGCCTGAGTGCTACATCCGTGGGAATACA
EST: gi|349819985|gb|FQ404707.1|FQ404707
EST:     GTGATACTTGGATGAACATTCATCTTCGGGAAGTTATCTGTACCTCAAAA                         GATGGAGATAGGTTTTGGAGAATGCCTGAGTGCTACATCCGTGGGAATACA
genomic: GTGATACTTGGATGAACATTCATCTTCGGGAAGTTATCTGTACCTCAAAAgtaatcaact ... tttaatgtagGATGGAGATAGGTTTTGGAGAATGCCTGAGTGCTACATCCGTGGGAATACA
EST: gi|349819983|gb|FQ404705.1|FQ404705
EST:     GTGATACTTGGATGAACATTCATCTTCGGGAAGTTATCTGTACCTCAAAA                         GATGGAGATAGGTTTTGGAGAATGCCTGAGTGCTACATCCGTGGGAATACA
genomic: GTGATACTTGGATGAACATTCATCTTCGGGAAGTTATCTGTACCTCAAAAgtaatcaact ... tttaatgtagGATGGAGATAGGTTTTGGAGAATGCCTGAGTGCTACATCCGTGGGAATACA
EST: gi|110372194|gb|EC936345.1|EC936345
EST:     GTGATACTTGGATGAACATTCATCTTCGGGAAGTTATCTGTACCTCAAAA                         GATGGAGATAGGTTTTGGAGAATGCCTGAGTGCTACATCCGTGGGAATACA
genomic: GTGATACTTGGATGAACATTCATCTTCGGGAAGTTATCTGTACCTCAAAAgtaatcaact ... tttaatgtagGATGGAGATAGGTTTTGGAGAATGCCTGAGTGCTACATCCGTGGGAATACA
EST: gi|110383606|gb|EC947989.1|EC947989
EST:     GTGATACTTGGATGAACATTCATCTTCGGGAAGTTATCTGTACCTCAAAA                         GATGGAGATAGGTTTTGGAGAATGCCTGAGTGCTACATCCGTGGGAATACA
genomic: GTGATACTTGGATGAACATTCATCTTCGGGAAGTTATCTGTACCTCAAAAgtaatcaact ... tttaatgtagGATGGAGATAGGTTTTGGAGAATGCCTGAGTGCTACATCCGTGGGAATACA
EST: gi|349827595|gb|FQ422463.1|FQ422463
EST:     GTGATACTTGGATGAACATTCATCTTCGGGAAGTTATCTGTACCTCAAAA                         GATGGAGATAGGTTTTGGAGAATGCCTGAGTGCTACATCCGTGGGAATACA
genomic: GTGATACTTGGATGAACATTCATCTTCGGGAAGTTATCTGTACCTCAAAAgtaatcaact ... tttaatgtagGATGGAGATAGGTTTTGGAGAATGCCTGAGTGCTACATCCGTGGGAATACA
EST: gi|351029470|gb|FQ436864.1|FQ436864
EST:     GTGATACTTGGATGAACATTCATCTTCGGGAAGTTATCTGTACCTCAAAA                         GATGGAGATAGGTTTTGGAGAATGCCTGAGTGCTACATCCGTGGGAATACA
genomic: GTGATACTTGGATGAACATTCATCTTCGGGAAGTTATCTGTACCTCAAAAgtaatcaact ... tttaatgtagGATGGAGATAGGTTTTGGAGAATGCCTGAGTGCTACATCCGTGGGAATACA
EST: gi|110692708|gb|EE068197.1|EE068197
EST:     GTGATACTTGGATGAACATTCATCTTCGGGAAGTTATCTGTACCTCAAAA                         GATGGAGATAGGTTTTGGAGAATGCCTGAGTGCTACATCCGTGGGAATACA
genomic: GTGATACTTGGATGAACATTCATCTTCGGGAAGTTATCTGTACCTCAAAAgtaatcaact ... tttaatgtagGATGGAGATAGGTTTTGGAGAATGCCTGAGTGCTACATCCGTGGGAATACA
EST: gi|351012236|gb|FQ426958.1|FQ426958
EST:     GTGATACTTGGATGAACATTCATCTTCGGGAAGTTATCTGTACCTCAAAA                         GATGGAGATAGGTTTTGGAGAATGCCTGAGTGCTACATCCGTGGGAATACA
genomic: GTGATACTTGGATGAACATTCATCTTCGGGAAGTTATCTGTACCTCAAAAgtaatcaact ... tttaatgtagGATGGAGATAGGTTTTGGAGAATGCCTGAGTGCTACATCCGTGGGAATACA
EST: gi|351044635|gb|FQ443166.1|FQ443166
EST:     GTGATACTTGGATGAACATTCATCTTCGGGAAGTTATCTGTACCTCAAAA                         GATGGAGATAGGTTTTGGAGAATGCCTGAGTGCTACATCCGTGGGAATACA
genomic: GTGATACTTGGATGAACATTCATCTTCGGGAAGTTATCTGTACCTCAAAAgtaatcaact ... tttaatgtagGATGGAGATAGGTTTTGGAGAATGCCTGAGTGCTACATCCGTGGGAATACA
EST: gi|351025082|gb|FQ433499.1|FQ433499
EST:     GTGATACTTGGATGAACATTCATCTTCGGGAAGTTATCTGTACCTCAAAA                         GATGGAGATAGGTTTTGGAGAATGCCTGAGTGCTACATCCGTGGGAATACA
genomic: GTGATACTTGGATGAACATTCATCTTCGGGAAGTTATCTGTACCTCAAAAgtaatcaact ... tttaatgtagGATGGAGATAGGTTTTGGAGAATGCCTGAGTGCTACATCCGTGGGAATACA
EST: gi|349828184|gb|FQ415512.1|FQ415512
EST:     GTGATACTTGGATGAACATTCATCTTCGGGAAGTTATCTGTACCTCAAAA                         GATGGAGATAGGTTTTGGAGAATGCCTGAGTGCTACATCCGTGGGAATACA
genomic: GTGATACTTGGATGAACATTCATCTTCGGGAAGTTATCTGTACCTCAAAAgtaatcaact ... tttaatgtagGATGGAGATAGGTTTTGGAGAATGCCTGAGTGCTACATCCGTGGGAATACA
EST: gi|351056955|gb|FQ443582.1|FQ443582
EST:     GTGATACTTGGATGAACATTCATCTTCGGGAAGTTATCTGTACCTCAAAA                         GATGGAGATAGGTTTTGGAGAATGCCTGAGTGCTACATCCGTGGGAATACA
genomic: GTGATACTTGGATGAACATTCATCTTCGGGAAGTTATCTGTACCTCAAAAgtaatcaact ... tttaatgtagGATGGAGATAGGTTTTGGAGAATGCCTGAGTGCTACATCCGTGGGAATACA
EST: gi|110374587|gb|EC939452.1|EC939452
EST:     GTGATACTTGGATGAACATTCATCTTCGGGAAGTTATCTGTACCTCAAAA                         GATGGAGATAGGTTTTGGAGAATGCCTGAGTGCTACATCCGTGGGAATACA
genomic: GTGATACTTGGATGAACATTCATCTTCGGGAAGTTATCTGTACCTCAAAAgtaatcaact ... tttaatgtagGATGGAGATAGGTTTTGGAGAATGCCTGAGTGCTACATCCGTGGGAATACA
EST: gi|351038850|gb|FQ448493.1|FQ448493
EST:     GTGATACTTGGATGAACATTCATCTTCGGGAAGTTATCTGTACCTCAAAA                         GATGGAGATAGGTTTTGGAGAATGCCTGAGTGCTACATCCGTGGGAATACA
genomic: GTGATACTTGGATGAACATTCATCTTCGGGAAGTTATCTGTACCTCAAAAgtaatcaact ... tttaatgtagGATGGAGATAGGTTTTGGAGAATGCCTGAGTGCTACATCCGTGGGAATACA
EST: gi|110372487|gb|EC936658.1|EC936658
EST:     GTGATACTTGGATGAACATTCATCTTCGGGAAGTTATCTGTACCTCAAAA                         GATGGAGATAGGTTTTGGAGAATGCCTGAGTGCTACATCCGTGGGAATACA
genomic: GTGATACTTGGATGAACATTCATCTTCGGGAAGTTATCTGTACCTCAAAAgtaatcaact ... tttaatgtagGATGGAGATAGGTTTTGGAGAATGCCTGAGTGCTACATCCGTGGGAATACA
EST: gi|352790730|gb|FQ478278.1|FQ478278
EST:     GTGATACTTGGATGAACATTCATCTTCGGGAAGTTATCTGTACCTCAAAA                         GATGGAGATAGGTTTTGGAGAATGCCTGAGTGCTACATCCGTGGGAATACA
genomic: GTGATACTTGGATGAACATTCATCTTCGGGAAGTTATCTGTACCTCAAAAgtaatcaact ... tttaatgtagGATGGAGATAGGTTTTGGAGAATGCCTGAGTGCTACATCCGTGGGAATACA
EST: gi|349828185|gb|FQ415513.1|FQ415513
EST:     GTGATACTTGGATGAACATTCATCTTCGGGAAGTTATCTGTACCTCAAAA                         GATGGAGATAGGTTTTGGAGAATGCCTGAGTGCTACATCCGTGGGAATACA
genomic: GTGATACTTGGATGAACATTCATCTTCGGGAAGTTATCTGTACCTCAAAAgtaatcaact ... tttaatgtagGATGGAGATAGGTTTTGGAGAATGCCTGAGTGCTACATCCGTGGGAATACA