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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGATGGTTGCCAGGTTTGAAAGTTGATGGAGATGCAAACCAACTGCCAACCATTGCTATAGTAGCGTCATATGACACATTTGGGGCTGCCCCAgtatgtattttcctttttaacattcctatctaaataaataaactttttagccatataaatgtctgagaaaatatattttttag

Basic information

species Vitis vinifera
transcript Vv06s0080g00880.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0080g00880.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA11G18710.1 (Glycine max), 5'ss of exon 5
GGATGGTTGCCAGGTTTGAAAGTTGATGGAGATGCAAACCAACTGCCAACCATTGCTATAGTAGCGTCATATGACACATTTGGGGCTGCCCCAgtatgtattttcctttttaacattcctatctaaataaataaact-ttttagccatataaatgtctgagaaaatatatt-ttttag
||||||||| ||||  ||||    ||||  |||||  | ||| | || |||||||| ||||| || ||||||||||| ||||||||||| || ||||||       | ||||  | | ||| ||| | ||  ||||| ||| |    ||| | | |   | || |||| |  || |||
GGATGGTTGGCAGGACTGAAGACAGATGATGATGCTCATCAATTACCCACCATTGCAATAGTTGCTTCATATGACACCTTTGGGGCTGCTCCTgtatgt-------tatttatgaattctacctataaaaccaaactgtttgaaatgtatgattatgctaaaatatatgtaattgtag

upper sequence: Vv06s0080g00880.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA12G09710.1 (Glycine max), 5'ss of exon 5
GGATGGTTGCCAGGTTTGAAAGTTGATGGAGATGCAAACCAACTGCCAACCATTGCTATAGTAGCGTCATATGACACATTTGGGGCTGCCCCAgtatgtattttcctttttaacattcctatctaaataaataaact-ttttagccatataaatgtctgagaaaatatatt-ttttag
||||||||| ||||  ||||    ||||  |||||  | ||| | || |||||||| ||||| || ||||||||||| ||||||||||| || ||||||       | ||||  | | ||| ||| | ||  ||||  ||| |     || | | | | | || || | |  ||  ||
GGATGGTTGGCAGGACTGAAGACAGATGATGATGCTCATCAATTACCCACCATTGCAATAGTTGCATCATATGACACCTTTGGGGCTGCTCCTgtatgt-------tatttatgaattctacctataaaaccaaaccgtttgaaatgcatgattatgttaaaacatctgtaattgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161718905|gb|FC067348.1|FC067348
EST:     TGCCAACCATTGCTATAGTAGCGTCATATGACACATTTGGGGCTGCCCCA                         GCATTGTCAGTGGGAAGTGATAGCAATGGAAGTGGAGTTGTGGCACTTCTT
genomic: TGCCAACCATTGCTATAGTAGCGTCATATGACACATTTGGGGCTGCCCCAgtatgtattt ... tattttttagGCATTGTCAGTGGGAAGTGATAGCAATGGAAGTGGAGTTGTGGCACTTCTT