Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCAGAAGGACAAGCGTTTCAGTGGTTCTGTGAAGTTGCCCCACATCCCTCGCCCCAAGATGAAGGTCTGCATGCTTGGTGATGCTCAACACGTGGAAGAGgtaattgtgctccacttggctgcattaatggcaataaaagaagtgaaagacaagtgtcattgctaattgaagaatatttttcaactatttttttgtttaa...

Basic information

species Vitis vinifera
transcript Vv06s0080g00400.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0080g00400.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA11G35450.2 (Glycine max), 5'ss of exon 3
CCAGAAGGACAAGCGTTTCAGTGGTTCTGTGAAGTTGCCCCACATCCCTCGCCCCAAGATGAAGGTCTGCATGCTTGGTGATGCTCAACACGTGGAAGAGgta---attgtgctccacttggctgcattaatggcaataaaag--aagtgaaagacaagtgtcattgctaa-ttgaagaatatttttcaactatttttttgtttaa
 ||||||||||||||||||||||| || || ||||||||||||||||||||||||||||||||  | |||||||||||||||||||| || || |||||||||   | | ||| | | |   |   | |  |     |   |   || |    |      |  |   | || || |||||  |      | | || | ||      
ACAGAAGGACAAGCGTTTCAGTGGCTCCGTCAAGTTGCCCCACATCCCTCGCCCCAAGATGAAAATTTGCATGCTTGGTGATGCTCAGCATGTTGAAGAGgtatctaatttgccctattcatcgaaactctttatgttgccatttaattaggtgctgtagggaacccccaagtttaagaaattaacctcattgttatctt------

upper sequence: Vv06s0080g00400.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA18G02970.1 (Glycine max), 5'ss of exon 1
CCAGAAGGACAAGCGTTTCAGTGGTTCTGTGAAGTTGCCCCACATCCCTCGCCCCAAGATGAAGGTCTGCATGCTTGGTGATGCTCAACACGTGGAAGAGgtaattgtgctcca----cttggctgcattaatggcaataaaagaagtgaaagacaagtgtcattgctaattgaagaat-atttttcaactatttttttgtttaa
 ||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||||  | |||||||||||||||||||| || || ||||||||   | |   |||    | |     |  | ||||    | ||  | |  | || || |  | |   | |||| |   | ||||||    ||    | |||    
ACAGAAGGACAAGCGTTTCAGTGGCTCTGTCAAGCTGCCCCACATCCCTCGCCCCAAGATGAAAATTTGCATGCTTGGTGATGCTCAGCATGTTGAAGAGgtctctatttgccatattcatcaagactcttatggattcataactatttcatgataattagc-tccttgattgcatgttgatttttacggtaaagctatgt----

upper sequence: Vv06s0080g00400.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA12G31040.2 (Glycine max), 5'ss of exon 2
CCAGAAGGACAAGCGTTTCAGTGGTTCTGTGAAGTTGCCCCACATCCCTCGCCCCAAGATGAAGGTCTGCATGCTTGGTGATGCTCAACACGTGGAAGAGgtaattg--tgctccacttggctgcattaatggcaataaaagaagtgaaagacaagtgt-cattgctaattgaagaatatttttcaactatttttttgtttaa-
|||||||||||||||||| ||||| ||||| |||||||| ||||| |||||||||||||||||| | || |||||||| ||||| |||||||| |||||||||||    || || | ||  |          || | |     | |      |||   |  ||||||  ||  ||| | | |||   ||   |||   ||||  
CCAGAAGGACAAGCGTTTTAGTGGCTCTGTTAAGTTGCCTCACATTCCTCGCCCCAAGATGAAGATTTGTATGCTTGGAGATGCCCAACACGTTGAAGAGgtaataagctgatctaattatcaaacccttgtgcgagattttcaattgggtgcaataatatattgct--ttacagactgtgttt--gcttcctttccatttata

upper sequence: Vv06s0080g00400.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA13G39270.2 (Glycine max), 5'ss of exon 2
CCAGAAGGACAAGCGTTTCAGTGGTTCTGTGAAGTTGCCCCACATCCCTCGCCCCAAGATGAAGGTCTGCATGCTTGGTGATGCTCAACACGTGGAAGAGgtaattgtgctccac-ttggctgcattaatggcaataaaagaagtgaaagacaagtgtcattgctaattgaagaatatttttcaactatttttt-tgtttaa
|||||||||||||||||||||||| ||||| |||||||| || || |||||||||||||||||| | || |||||||| ||||| || ||||| || |||||||   |  |  |   ||     |   | |  | | ||    |||    |    | || | | || || |  | ||  |  || ||    | | || ||| 
CCAGAAGGACAAGCGTTTCAGTGGCTCTGTTAAGTTGCCTCATATTCCTCGCCCCAAGATGAAGATTTGTATGCTTGGAGATGCCCAGCACGTTGAGGAGgtaacaataatttatgctgtagagaaccacgagattcaatcgtgtgcttcattgttttcctagatattttac-attagataacacctgggatgtatgctta-

upper sequence: Vv06s0080g00400.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA04G32330.1 (Glycine max), 5'ss of exon 1
CCAGAAGGACAAGCGTTTCAGTGGTTCTGTGAAGTTGCCCCACATCCCTCGCCCCAAGATGAAGGTCTGCATGCTTGGTGATGCTCAACACGTGGAAGAGgtaattg--tgctccacttggctg-cattaatggcaataaaagaagtgaaagacaagtgtcattgctaattgaagaatatttttcaactatttttttgtttaa-
 ||||||||||||||||| ||||| ||||| |||||||  ||||| ||| |||||||||||||| | || |||||||| ||||| ||||| || |||||||||||    || || | ||  |   |  |  ||  |       || ||   |  |      ||||||  |||  || | | |||   ||  |||||  ||||  
TCAGAAGGACAAGCGTTTTAGTGGCTCTGTTAAGTTGCGTCACATTCCTTGCCCCAAGATGAAGATTTGTATGCTTGGAGATGCCCAACATGTTGAAGAGgtaataagctgatctaattatcaaacccttgtgtgagattttcaattgggtgcaataatatattgct--ttgctgactgtgttt--gcttctttttcatttata

upper sequence: Vv06s0080g00400.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: AT2G27530.1 (Arabidopsis thaliana), 5'ss of exon 3
CCAGAAGGACAAGCGTTTCAGTGGTTCTGTGAAGTTGCCCCACATCCCTCGCCCCAAGATGAAGGTCTGCATGCTTGGTGATGCTCAACACGTGGAAGAGgtaattgtgctccacttggctgcattaatggcaataaaagaagtgaaagacaagtgtcattgctaattgaagaatatttttcaactatttttttgtttaa
 || ||||| |||||||||||||| ||||||||| | || || || |||||||| || |||||| |||| |||||||| |||||||| || || || ||||| ||||   ||  ||   ||   |   |  |  |    |   ||||            ||| | |||||   | | | ||  |   || ||||| |   
ACAAAAGGATAAGCGTTTCAGTGGATCTGTGAAGCTCCCACATATTCCTCGCCCAAAAATGAAGATCTGTATGCTTGGAGATGCTCAGCATGTTGAGGAGgtgattgaaatct-ctatactttttgtgtatct-tgtttggtttgaa------------ttggtgattgacacaaagtgtttgatgtttgttttgatag-

upper sequence: Vv06s0080g00400.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: AT1G08360.1 (Arabidopsis thaliana), 5'ss of exon 3
CCAGAAGGACAAGCGTTTCAGTGGTTCTGTGAAGTTGCCCCACATCCCTCGCCCCAAGATGAAGGTCTGCATGCTTGGTGATGCTCAACACGTGGAAGAGgtaattgtgctccacttggctgcattaatggcaataaaagaagtga--aagacaagtgtcat-tgctaattgaagaatatttttcaactatttttttgtttaa-
 || |||||||||||||||||||| ||||| ||||| || || ||||| || || || |||||| |||||||||| || ||||| || || || |||||||| ||    ||   | |||    ||| ||     |       ||       | ||  ||  | |||| |||  |     |   || | || |||    ||| | 
TCAAAAGGACAAGCGTTTCAGTGGATCTGTCAAGTTACCACATATCCCCCGTCCTAAAATGAAGATCTGCATGCTCGGAGATGCCCAGCATGTTGAAGAGgtgatatatcttttcatgg--aaattgatcattttgtgctctgtttcttgtataatggttttgtgctcatttcatttggtggctctattagtttc--atttgat

upper sequence: Vv06s0080g00400.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: AT5G22440.1 (Arabidopsis thaliana), 5'ss of exon 3
CCAGAAGGACAAGCGTTTCAGTGGTTCTGTGAAGTTGCCCCACATCCCTCGCCCCAAGATGAAGGTCTGCATGCTTGGTGATGCTCAACACGTGGAAGAGgtaattgtgctccacttggctgcattaatggcaataaaagaagtgaaagacaagtgtcattgctaattgaagaatatttttcaactatttttttgtttaa
 || ||||||||| | || || ||||||||||| ||||| ||| | ||| | || ||||||||| | ||||||||||||||||| || ||||| ||||||||          |||||   | |     |     | |||    |  | ||  |||    ||  || |  |  | |||   |   |  ||  |||  ||| 
TCAAAAGGACAAGAGATTTAGCGGTTCTGTGAAATTGCCTCACGTTCCTAGGCCAAAGATGAAGATTTGCATGCTTGGTGATGCCCAGCACGTCGAAGAGgt---------tcacttttttccgccttttcttttgaaaatgtt--atgattagtac--ttagtagtatagtactataacttg-cggttggtttacttag

upper sequence: Vv06s0080g00400.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: PP1S40_297V6.1 (Physcomitrella patens), 5'ss of exon 2
CCAGAAGGACAAGCGTTTCAGTGGTTCTGTGAAGTTGCCCCACATCCCTCGCCCCAAGATGAAGGTCTGCATGCTTGGTGATGCTCAACACGTGGAAGAGgtaattgtgctccacttggctgcattaatggcaataaaagaagtgaaagacaagtgtcattgctaattgaagaat-atttttcaactatttttttgtttaa------
|||||| ||||| |||||||| || ||||||||| |||| ||||| ||||| || |||||||  || ||||||||||| |||||||| ||||| || ||||| ||  |    || | |  |   ||  | ||  | | |   ||   |        | ||   | ||| | |  | |||| | ||| |   ||   | | |      
CCAGAAAGACAAACGTTTCAGCGGCTCTGTGAAGCTGCCACACATTCCTCGTCCTAAGATGAGAGTGTGCATGCTTGGAGATGCTCAGCACGTCGAGGAGgtcatattcgcacattggaataattt--ttgccttcatatttgtttcatttttagattatc-ttgattaatgtctcatttcttaaccaacgttc-atctgacaatag

upper sequence: Vv06s0080g00400.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: PP1S427_1V6.1 (Physcomitrella patens), 5'ss of exon 2
CCAGAAGGACAAGCGTTTCAGTGGTTCTGTGAAGTTGCCCCACATCCCTCGCCCCAAGATGAAGGTCTGCATGCTTGGTGATGCTCAACACGTGGAAGAGgtaa--ttgtgctcca--cttggctgc--------attaatggcaataaaagaagtgaaagacaa-gtgtcattgctaattgaagaatatttttcaactatttttttgt-ttaa-------------------------------------------------------------------------------
|||||| ||||||||||||||||| || |||||| | |||||||| ||||| || ||||||| | | || |||||||| ||||| |||||  | |||||||||   || | ||| |   |||  |           || ||||    | ||   |   || |||  ||   |||      |   |      | |||      ||| | | ||||                                                                               
CCAGAAAGACAAGCGTTTCAGTGGCTCCGTGAAGCTTCCCCACATTCCTCGTCCTAAGATGAGGATTTGTATGCTTGGAGATGCCCAACATATTGAAGAGgtatgcttattctcaaattttgattctttctatttgttgatggtgccagaaattgaataaaacattgtagaattttctgctctgggtctcatctcactggcctttgtatattaaaactagaaattatcaccctttacttgataatggataattgctgatgtcgtgagtttcttttggtcgtaactcgtcacag

upper sequence: Vv06s0080g00400.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: PP1S18_121V6.1 (Physcomitrella patens), 5'ss of exon 2
CCAGAAGGACAAGCGTTTCAGTGGTTCTGTGAAGTTGCCCCACATCCCTCGCCCCAAGATGAAGGTCTGCATGCTTGGTGATGCTCAACACGTGGAAGAGgtaattgtgct---ccacttggctgcattaatggcaataaaagaagtgaaagacaagtgtcattgc------taattgaagaatatttttcaactatttttttgtttaa---
|||||| |||||||||||||||||||| |||||| |||| ||||| |||||||| ||||||   || |||||||| || ||||| || ||||| || |||||| ||   ||    ||  |     ||   |||   | ||      ||  || || |   |||| |      | |||      ||||| |   |    || |||  |||   
CCAGAAAGACAAGCGTTTCAGTGGTTCCGTGAAGCTGCCACACATTCCTCGCCCTAAGATGCGCGTGTGCATGCTCGGAGATGCCCAGCACGTTGAGGAGgtatttcctctaactcaactaatgccacccatgttgagaagcattttgtcag-catgccacattacgcaggttgattacctcttatttattcgccccattattgcgtaacag

upper sequence: Vv06s0080g00400.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: EFJ31249 (Selaginella moellendorffii), 5'ss of exon 2
CCAGAAGGACAAGCGTTTCAGTGGTTCTGTGAAGTTGCCCCACATCCCTCGCCCCAAGATGAAGGTCTGCATGCTTGGTGATGCTCAACACGTGGAAGAGgtaattgtgctccacttggctgcattaatggcaataaaagaagtgaaagacaagtgtcattgctaattgaagaatatttttcaactatttttttgtttaa
 |||||||||||||||||||| || || |||||| |||| |||||  | || ||||||||||  || |||||||| |||||||| || || || |  |||||||   ||  |  | |  || | ||| | ||       | | ||||  ||  ||  |||||||  ||     |                          
GCAGAAGGACAAGCGTTTCAGCGGCTCGGTGAAGCTGCCTCACATTGCGCGGCCCAAGATGAGAGTGTGCATGCTCGGTGATGCGCAGCATGTAGGCGAGgtaagattgagcgccctctctcctttagttgcc------ggattgaatcactggt-ccattgcttttttgcacag-------------------------

upper sequence: Vv06s0080g00400.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: EFJ34353 (Selaginella moellendorffii), 5'ss of exon 2
CCAGAAGGACAAGCGTTTCAGTGGTTCTGTGAAGTTGCCCCACATCCCTCGCCCCAAGATGAAGGTCTGCATGCTTGGTGATGCTCAACACGTGGAAGAGgtaattgtgctccacttggctgcattaatggcaataaaagaagtgaaagacaagtgtcattgctaattgaagaatatttttcaactatttttttgtttaa
 |||||||||||||||||||| || || |||||| |||| |||||  | || ||||||||||  || |||||||| |||||||| || || || |  |||||||   ||  |  | || || | ||  | ||       | | ||||  ||  ||  | |||||  ||    |                           
GCAGAAGGACAAGCGTTTCAGCGGCTCGGTGAAGCTGCCTCACATTGCCCGGCCCAAGATGAGAGTGTGCATGCTCGGTGATGCGCAGCATGTAGGGGAGgtaagattgagcgccctgtctccttttgttgcc------ggattgaatcactggt-ccgttgctttttttgcacag------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71868912|gb|DT017967.1|DT017967
EST:     GCCCCAAGATGAAGGTCTGCATGCTTGGTGATGCTCAACACGTGGAAGAG                         GCAGAAAAGATAGGCTTGGAATACATGGATGTGGAAGGGCTAAAAAAGCTG
genomic: GCCCCAAGATGAAGGTCTGCATGCTTGGTGATGCTCAACACGTGGAAGAGgtaattgtgc ... taaattacagGCAGAAAAGATAGGCTTGGAATACATGGATGTGGAAGGGCTAAAAAAGCTG
EST: gi|71867230|gb|DT016285.1|DT016285
EST:     GCCCCAAGATGAAGGTCTGCATGCTTGGTGATGCTCAACACGTGGAAGAG                         GCAGAAAAGATAGGCTTGGAATACATGGATGTGGAAGGGCTAAAAAAGCTG
genomic: GCCCCAAGATGAAGGTCTGCATGCTTGGTGATGCTCAACACGTGGAAGAGgtaattgtgc ... taaattacagGCAGAAAAGATAGGCTTGGAATACATGGATGTGGAAGGGCTAAAAAAGCTG
EST: gi|71868681|gb|DT017736.1|DT017736
EST:     GCCCCAAGATGAAGGTCTGCATGCTTGGTGATGCTCAACACGTGGAAGAG                         GCAGAAAAGATAGGCTTGGAATACATGGATGTGGAAGGGCTAAAAAAGCTG
genomic: GCCCCAAGATGAAGGTCTGCATGCTTGGTGATGCTCAACACGTGGAAGAGgtaattgtgc ... taaattacagGCAGAAAAGATAGGCTTGGAATACATGGATGTGGAAGGGCTAAAAAAGCTG
EST: gi|161710675|gb|FC059046.1|FC059046
EST:     GCCCCAAGATGAAGGTCTGCATGCTTGGTGATGCTCAACACGTGGAAGAT                         GCAGAAAAGATAGGCTTGGAATACATGGATGTGGAAGGGCTAAAAAAGCTG
genomic: GCCCCAAGATGAAGGTCTGCATGCTTGGTGATGCTCAACACGTGGAAGAGgtaattgtgc ... taaattacagGCAGAAAAGATAGGCTTGGAATACATGGATGTGGAAGGGCTAAAAAAGCTG
EST: gi|110386493|gb|EC951092.1|EC951092
EST:     GCCCCAAGATGAAGGTCTGCATGCTTGGTGATGCTCAACACGTGGAAGAG                         GCAGAAAAGATAGGCTTGGAATACATGGATGTGGAAGGGCTAAAAAAGCTG
genomic: GCCCCAAGATGAAGGTCTGCATGCTTGGTGATGCTCAACACGTGGAAGAGgtaattgtgc ... taaattacagGCAGAAAAGATAGGCTTGGAATACATGGATGTGGAAGGGCTAAAAAAGCTG
EST: gi|71868840|gb|DT017895.1|DT017895
EST:     GCCCCAAGATGAAGGTCTGCATGCTTGGTGATGCTCAACACGTGGAAGAG                         GCAGAAAAGATAGGCTTGGAATACATGGATGTGGAAGGGCTAAAAAAGCTG
genomic: GCCCCAAGATGAAGGTCTGCATGCTTGGTGATGCTCAACACGTGGAAGAGgtaattgtgc ... taaattacagGCAGAAAAGATAGGCTTGGAATACATGGATGTGGAAGGGCTAAAAAAGCTG
EST: gi|30298813|gb|CB975607.1|CB975607
EST:     GCCCCAAGATGAAGGTCTGCATGCTTGGTGATGCTCAACACGTGGAAGAG                         GCAGAAAAGATAGGCTTGGAATACATGGATGTGGAAGGGCTAAAAAAGCTG
genomic: GCCCCAAGATGAAGGTCTGCATGCTTGGTGATGCTCAACACGTGGAAGAGgtaattgtgc ... taaattacagGCAGAAAAGATAGGCTTGGAATACATGGATGTGGAAGGGCTAAAAAAGCTG
EST: gi|77583338|gb|DV220702.1|DV220702
EST:     GCCCCAAGATGAAGGTCTGCATGCTTGGTGATGCTCAACACGTGGAAGAG                         GCAGAAAAGATAGGCTTGGAATACATGGATGTGGAAGGGCTAAAAAAGCTG
genomic: GCCCCAAGATGAAGGTCTGCATGCTTGGTGATGCTCAACACGTGGAAGAGgtaattgtgc ... taaattacagGCAGAAAAGATAGGCTTGGAATACATGGATGTGGAAGGGCTAAAAAAGCTG
EST: gi|71869642|gb|DT018697.1|DT018697
EST:     GCCCCAAGATGAAGGTCTGCATGCTTGGTGATGCTCAACACGTGGAAGAG                         GCAGAAAAGATAGGCTTGGAATACATGGATGTGGAAGGGCTAAAAAAGCTG
genomic: GCCCCAAGATGAAGGTCTGCATGCTTGGTGATGCTCAACACGTGGAAGAGgtaattgtgc ... taaattacagGCAGAAAAGATAGGCTTGGAATACATGGATGTGGAAGGGCTAAAAAAGCTG
EST: gi|77586494|gb|DV222363.1|DV222363
EST:     GCCCCAAGATGAAGGTCTGCATGCTTGGTGATGCTCAACACGTGGAAGAG                         GCAGAAAAGATAGGCTTGGAATACATGGATGTGGAAGGGCTAAAAAAGCTG
genomic: GCCCCAAGATGAAGGTCTGCATGCTTGGTGATGCTCAACACGTGGAAGAGgtaattgtgc ... taaattacagGCAGAAAAGATAGGCTTGGAATACATGGATGTGGAAGGGCTAAAAAAGCTG
EST: gi|110689031|gb|EE067943.1|EE067943
EST:     GCCCCAAGATGAAGGTCTGCATGCTTGGTGATGCTCAACACGTGGAAGAG                         GCAGAAAAGATAGGCTTGGAATACATGGATGTGGAAGGGCTAAAAAAGCTG
genomic: GCCCCAAGATGAAGGTCTGCATGCTTGGTGATGCTCAACACGTGGAAGAGgtaattgtgc ... taaattacagGCAGAAAAGATAGGCTTGGAATACATGGATGTGGAAGGGCTAAAAAAGCTG
EST: gi|71880113|gb|DT029168.1|DT029168
EST:     GCCCCAAGATGAAGGTCTGCATGCTTGGTGATGCTCAACACGTGGAAGAG                         GCAGAAAAGATAGGCTTGGAATACATGGATGTGGAAGGGCTAAAAAAGCTG
genomic: GCCCCAAGATGAAGGTCTGCATGCTTGGTGATGCTCAACACGTGGAAGAGgtaattgtgc ... taaattacagGCAGAAAAGATAGGCTTGGAATACATGGATGTGGAAGGGCTAAAAAAGCTG
EST: gi|71872587|gb|DT021642.1|DT021642
EST:     GCCCCAAGATGAAGGTCTGCATGCTTGGTGATGCTCAACACGTGGAAGAG                         GCAGAAAAGATAGGCTTGGAATACATGGATGTGGAAGGGCTAAAAAAGCTG
genomic: GCCCCAAGATGAAGGTCTGCATGCTTGGTGATGCTCAACACGTGGAAGAGgtaattgtgc ... taaattacagGCAGAAAAGATAGGCTTGGAATACATGGATGTGGAAGGGCTAAAAAAGCTG
EST: gi|77581865|gb|DV219896.1|DV219896
EST:     GCCCCAAGATGAAGGTCTGCATGCTTGGTGATGCTCAACACGTGGAAGAG                         GCAGAAAAGATAGGCTTGGAATACATGGATGTGGAAGGGCTAAAAAAGCTG
genomic: GCCCCAAGATGAAGGTCTGCATGCTTGGTGATGCTCAACACGTGGAAGAGgtaattgtgc ... taaattacagGCAGAAAAGATAGGCTTGGAATACATGGATGTGGAAGGGCTAAAAAAGCTG
EST: gi|110693837|gb|EE070417.1|EE070417
EST:     GCCCCAAGATGAAGGTCTGCATGCTTGGTGATGCTCAACACGTGGAAGAG                         GCAGAAAAGATAGGCTTGGAATACATGGATGTGGAAGGGCTAAAAAAGCTG
genomic: GCCCCAAGATGAAGGTCTGCATGCTTGGTGATGCTCAACACGTGGAAGAGgtaattgtgc ... taaattacagGCAGAAAAGATAGGCTTGGAATACATGGATGTGGAAGGGCTAAAAAAGCTG
EST: gi|110686483|gb|EE064171.1|EE064171
EST:     GCCCCAAGATGAAGGTCTGCATGCTTGGTGATGCTCAACACGTGGAAGAG                         GCAGAAAAGATAGGCTTGGAATACATGGATGTGGAAGGGCTAAAAAAGCTG
genomic: GCCCCAAGATGAAGGTCTGCATGCTTGGTGATGCTCAACACGTGGAAGAGgtaattgtgc ... taaattacagGCAGAAAAGATAGGCTTGGAATACATGGATGTGGAAGGGCTAAAAAAGCTG
EST: gi|30126576|gb|CB911915.1|CB911915
EST:     GCCCCAAGATGAAGGTCTGCATGCTTGGTGATGCTCAACACGTGGAAGAG                         GCAGAAAAGATAGGCTTGGAATACATGGATGTGGAAGGGCTAAAAAAGCTG
genomic: GCCCCAAGATGAAGGTCTGCATGCTTGGTGATGCTCAACACGTGGAAGAGgtaattgtgc ... taaattacagGCAGAAAAGATAGGCTTGGAATACATGGATGTGGAAGGGCTAAAAAAGCTG
EST: gi|77577254|gb|DV217332.1|DV217332
EST:     GCCCCAAGATGAAGGTCTGCATGCTTGGTGATGCTCAACACGTGGAAGAG                         GCAGAAAAGATAGGCTTGGAATACATGGATGTGGAAGGGCTAAAAAAGCTG
genomic: GCCCCAAGATGAAGGTCTGCATGCTTGGTGATGCTCAACACGTGGAAGAGgtaattgtgc ... taaattacagGCAGAAAAGATAGGCTTGGAATACATGGATGTGGAAGGGCTAAAAAAGCTG
EST: gi|110723348|gb|EE100554.1|EE100554
EST:     GCCCCAAGATGAAGGTCTGCATGCTTGGTGATGCTCAACACGTGGAAGAG                         GCAGAAAAGATAGGCTTGGAATACATGGATGTGGAAGGGCTAAAAAAGCTG
genomic: GCCCCAAGATGAAGGTCTGCATGCTTGGTGATGCTCAACACGTGGAAGAGgtaattgtgc ... taaattacagGCAGAAAAGATAGGCTTGGAATACATGGATGTGGAAGGGCTAAAAAAGCTG
EST: gi|37189916|gb|CF609265.1|CF609265
EST:     GCCCCAAGATGAAGGTCTGCATGCTTGGTGATGCTCAACACGTGGAAGAG                         GCAGAAAAGATAGGCTTGGAATACATGGATGTGGAAGGGCTAAAAAAGCTG
genomic: GCCCCAAGATGAAGGTCTGCATGCTTGGTGATGCTCAACACGTGGAAGAGgtaattgtgc ... taaattacagGCAGAAAAGATAGGCTTGGAATACATGGATGTGGAAGGGCTAAAAAAGCTG
EST: gi|110686797|gb|EE064845.1|EE064845
EST:     GCCCCAAGATGAAGGTCTGCATGCTTGGTGATGCTCAACACGTGGAAGAG                         GCAGAAAAGATAGGCTTGGAATACATGGATGTGGAAGGGCTAAAAAAGCTG
genomic: GCCCCAAGATGAAGGTCTGCATGCTTGGTGATGCTCAACACGTGGAAGAGgtaattgtgc ... taaattacagGCAGAAAAGATAGGCTTGGAATACATGGATGTGGAAGGGCTAAAAAAGCTG
EST: gi|71875077|gb|DT024132.1|DT024132
EST:     GCCCCAAGATGAAGGTCTGCATGCTTGGTGATGCTCAACACGTGGAAGAG                         GCAGAAAAGATAGGCTTGGAATACATGGATGTGGAAGGGCTAAAAAAGCTG
genomic: GCCCCAAGATGAAGGTCTGCATGCTTGGTGATGCTCAACACGTGGAAGAGgtaattgtgc ... taaattacagGCAGAAAAGATAGGCTTGGAATACATGGATGTGGAAGGGCTAAAAAAGCTG
EST: gi|110394329|gb|EC959115.1|EC959115
EST:     GCCCCAAGATGAAGGTCTGCATGCTTGGTGATGCTCAACACGTGGAAGAG                         GCAGAAAAGATAGGCTTGGAATACATGGATGTGGAAGGGCTAAAAAAGCTG
genomic: GCCCCAAGATGAAGGTCTGCATGCTTGGTGATGCTCAACACGTGGAAGAGgtaattgtgc ... taaattacagGCAGAAAAGATAGGCTTGGAATACATGGATGTGGAAGGGCTAAAAAAGCTG
EST: gi|71865803|gb|DT014858.1|DT014858
EST:     GCCCCAAGATGAAGGTCTGCATGCTTGGTGATGCTCAACACGTGGAAGAG                         GCAGAAAAGATAGGCTTGGAATACATGGATGTGGAAGGGCTAAAAAAGCTG
genomic: GCCCCAAGATGAAGGTCTGCATGCTTGGTGATGCTCAACACGTGGAAGAGgtaattgtgc ... taaattacagGCAGAAAAGATAGGCTTGGAATACATGGATGTGGAAGGGCTAAAAAAGCTG
EST: gi|71879518|gb|DT028573.1|DT028573
EST:     GCCCCAAGATGAAGGTCTGCATGCTTGGTGATGCTCAACACGTGGAAGAG                         GCAGAAAAGATAGGCTTGGAATACATGGATGTGGAAGGGCTAAAAAAGCTG
genomic: GCCCCAAGATGAAGGTCTGCATGCTTGGTGATGCTCAACACGTGGAAGAGgtaattgtgc ... taaattacagGCAGAAAAGATAGGCTTGGAATACATGGATGTGGAAGGGCTAAAAAAGCTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CCAGAAGGACAAGCGTTTCAGTGGTTCTGTGAAGTTGCCCCACATCCCTCGCCCCAAGATGAAGGTCTGCATGCTTGGTGATGCTCAACACGTGGAAGAGgtaattgtgctccacttggctgcattaatggcaataaaagaagtgaaagacaagtgtcattgctaattgaagaatatttttcaactatttttttgtttaa

- - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaagaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aagaata