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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGTTGCTGATAGGTTAGAACTAGGATCCAAGTTTTATGTGATTGGAGTTTCAATGGGATCCTACCCCACCTGGAGTTGCCTCAAACATATACCACACAGgcaaaaaaacttacttccaaagtctagattcattgccttttaagcttcagtccattcaaactctccttacttgaaacaacctcactcttgcag

Basic information

species Vitis vinifera
transcript Vv06s0080g00330.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0080g00330.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA12G30970.1 (Glycine max), 5'ss of exon 3
AAGTTGCTGATAGGTTAGAACTAGGATCCAAGTTTTATGTGATTGGAGTTTCAATGGGATCCTACCCCACCTGGAGTTGCCTCAAACATATACCACACAGgcaaa----aaaacttact--tccaaagtctagattcattgccttttaagcttcag----------------tccattcaaactctcct--------tacttgaaacaacctcactcttgcag--------------------------------------------------
|  ||||||||  | || || ||||| |  ||||||||||||||||||| |||||||| || ||| | || |||||||| || ||  || | || |||||| |||    || ||| | |  |   |||   | ||| | | | ||||    ||||                 | |||||| |   |  |         |||  ||| ||| ||  | || |                                                    
AGCTTGCTGATCAGCTACAATTAGGACCACAGTTTTATGTGATTGGAGTCTCAATGGGTTCATACGCTACTTGGAGTTGTCTAAAGTATTTGCCCCACAGgtaaattacaatactcaatgtttttaaggacatatttacttcttttttcatttcatgtttttactttttgttttcattcagagatttgtataagaaacactgaaaataacttctttttttcttttttgtgtactttgttttggtcagttatgttaaaagaccattttgtgcag