Sequence
atgc intronic sequence ATGC exonic sequenceTGCTGATGGTTTTGATATGTTTCCAACTTTATTGGTGACGGATGGTTCTTGCATGATAGATCGCCGCATGGGAATTCATGGCCATCCTTTAGAAATTCAGgtatgtacatgcattcgtaacagtccatctgtgccttctttccaatcagtttcttttgttcccctatcatctaacaatttgttgcatttcaaatgtcatt...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0061g01520.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: LOC_Os02g32730.1 (Oryza sativa), 5'ss of exon 4
TGCTGATGGTTTTGATATGTTTCCAACTTTATTGGTGACGGATGGTTCTTGCATGATAGATCGCCGCATGGGAATTCATGGCCATCCTTTAGAAATTCAGgtatgtacatgcattcgtaacagtccatctgtgccttctttccaatcagtttcttttgttcccctatcatctaacaatttgttgcatttcaaa--tgtcatt-
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AGCTGATGGGTTTGACATGTTCCCTACATTACTGGTAACTGATGGATCATGCATGATTGATCGTCGAATGGGAATTCATGGGCATCCACTTGAAATTCAGgttttttacgatactcctgtcaat---tctgtgtcttttgtgaatggattttatcccattcaatcaaaagcatgtgtaccctcaaaagttaaacctatctttt
upper sequence: Vv06s0061g01520.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: LOC_Os04g33490.1 (Oryza sativa), 5'ss of exon 3
TGCTGATGGTTTTGATATGTTTCCAACTTTATTGGTGACGGATGGTTCTTGCATGATAGATCGCCGCATGGGAATTCATGGCCATCCTTTAGAAATTCAGgtatgtacatgcattcgtaacagtccatctgtgccttctttccaatcagtttcttttgttcccctatcatctaacaatttgttgcatttcaaatgtcatt-
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AGCTGATGGCTTCGACATGTTTCCCACCTTGCTTGTTACTGATGGCTCATGCATGATAGATCGTCGAATGGGAATCCATGGACACCCATTGGAAATTCAGgta-gcatgaaaatttaacagagtgaaatatcataagttcatatagcaaagcaaacttatatgatcggagttaggcagtaaatgcattttgaattatggta
upper sequence: Vv06s0061g01520.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: AT5G22510.1 (Arabidopsis thaliana), 5'ss of exon 4
TGCTGATGGTTTTGATATGTTTCCAACTTTATTGGTGACGGATGGTTCTTGCATGATAGATCGCCGCATGGGAATTCATGGCCATCCTTTAGAAATTCAGgtatgtacatgcattcgtaacagtccatctgtgccttctttccaatcagtttcttttgttcccctatcatctaacaatttgttgcatttcaaatgtcatt
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CGCTGATGGTTTCGATATGTTTCCTACTTTGTTAGTTACTGATGGGTCCTGCATGATAGACCGTCGAATGGGAATCCATGGTCATCCCCTGGAGATTCAGgtgagca-----gttcct-----tcaatctgagtttgcactagaagctgtctatgcaattggcaaaccgctttatttatcgtt-tactt----tgtcag-
upper sequence: Vv06s0061g01520.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: PP1S15_44V6.1 (Physcomitrella patens), 5'ss of exon 4
TGCTGATGGTTTTGATATGTTTCCAACTTTATTGGTGACGGATGGTTCTTGCATGATAGATCGCCGCATGGGAATTCATGGCCATCCTTTAGAAATTCAGgtatgtacatgcattcgtaacagtccatctgtgcct-----tctttccaatcagtttcttttgttcccctatcatctaacaatttgttgcatttcaaatgtcatt
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AGCAGATGGTTTCGACATGTTTCCGACTTTGCTGGTCACTGATGGCTCTTGTATGATTGATCGCCGCATGGGAATTCATGGTCACCCCCTTGAGATTCAGgttcgtcaaccaatacgtagagaatcatacccccaaaaaaatgcttttgctcg--ttttctcgtttctgtagaaggctcaaatttcttttttttattatttt---
upper sequence: Vv06s0061g01520.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: PP1S279_35V6.1 (Physcomitrella patens), 5'ss of exon 3
TGCTGATGGTTTTGATATGTTTCCAACTTTATTGGTGACGGATGGTTCTTGCATGATAGATCGCCGCATGGGAATTCATGGCCATCCTTTAGAAATTCAGgtatgtacatgcatt-cgtaacagtccatctgtgccttctttccaa----tcagtttcttttgttcccctatcatctaacaatttgttgcatttcaaatgtcatt
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AGCAGACGGTTTCGATATGTTTCCAACTCTGCTGGTGACCGATGGCTCTTGTATGATTGATCGCCGCATGGGTATTCATGGGCATCCCCTTGAAATTCAGgtat-tatacgtgttacatatccctcagcccttgaattttagaagaaatattatttactatttgtcgatatttctttcgcaaattattattgcttgtgttt----
upper sequence: Vv06s0061g01520.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: EFJ21591 (Selaginella moellendorffii), 5'ss of exon 3
TGCTGATGGTTTTGATATGTTTCCAACTTTATTGGTGACGGATGGTTCTTGCATGATAGATCGCCGCATGGGAATTCATGGCCATCCTTTAGAAATTCAGgtatgtacatgcattcgtaacagtccatctgtgccttctttccaatcagtttcttttgttcccctatcatctaacaatttgttgcatttcaaatgtcatt
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TGCTGATGGCTTCGACATGTTTCCGACTTTGCTCGTGACTGATGGTTCGTGCATGATCGACAGAAGGATGGGAATTCATGGCCATCCCCTCGAAATACAGgtatgc-catcc-ttcttgaaagctt-------tcactttcctgactagttt-ttctatcttttgag---------------------------------
upper sequence: Vv06s0061g01520.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: EFJ23966 (Selaginella moellendorffii), 5'ss of exon 3
TGCTGATGGTTTTGATATGTTTCCAACTTTATTGGTGACGGATGGTTCTTGCATGATAGATCGCCGCATGGGAATTCATGGCCATCCTTTAGAAATTCAGgtatgtacatgcattcgtaacagtccatctgtgccttctttccaatcagtttcttttgttcccctatcatctaacaatttgttgcatttcaaatgtcatt
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TGCTGATGGCTTCGACATGTTTCCGACTTTGCTCGTGACTGATGGTTCGTGCATGATCGATAGAAGGATGGGAATTCATGGCCATCCCCTCGAAATACAGgtatgc-caccc-ttcttgaaagctt-------tcactttcctgactagttt-ttctatcttttgag---------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110720365|gb|EE096223.1|EE096223EST: GCATGATAGATCGCCGCATGGGAATTCATGGCCATCCTTTAGAAATTCAG GCACTGTTTTATTCAGCATTACTTTGTGCACGAGAGATGCTTGCTCCTGAG
genomic: GCATGATAGATCGCCGCATGGGAATTCATGGCCATCCTTTAGAAATTCAGgtatgtacat ... ttttttgtagGCACTGTTTTATTCAGCATTACTTTGTGCACGAGAGATGCTTGCTCCTGAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGCTGATGGTTTTGATATGTTTCCAACTTTATTGGTGACGGATGGTTCTTGCATGATAGATCGCCGCATGGGAATTCATGGCCATCCTTTAGAAATTCAGgtatgtacatgcattcgtaacagtccatctgtgccttctttccaatcagtttcttttgttcccctatcatctaacaatttgttgcatttcaaatgtcatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttcccct