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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCCGTGAATGGTGACGCTGAAGATCGCCTTTTTGGGGTCTTCAACGCCATTGCTATCATTGCCACAACATTTGGGAATGGTATCATCCCTGAAATTCAGgtttgtggttaactagctccatccccttgattatatttttcaagtcctattccaatgataactgttgggatgtaatggatttcttggttgcag

Basic information

species Vitis vinifera
transcript Vv06s0061g01210.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0061g01210.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA12G08980.1 (Glycine max), 5'ss of exon 5
CTCCGTGAATGGTGACGCTGAAGATCGCCTTTTTGGGGTCTTCAACGCCATTGCTATCATTGCCACAACATTTGGGAATGGTATCATCCCTGAAATTCAGgtttgtggttaactagctccatccccttgattatatttttcaagtcctattccaatgataactgttgggatgtaatggattt-cttggttgcag--------
 ||  |||| |||||  | |   ||||| | |||||  ||||||| || ||||||||||||||||| || | ||| ||||| ||||| || ||||||||||||||     |  |  | || ||   || |    |  | |   || | ||   | | || | |||     |  ||   | |   ||  || ||         
TTCTTTGAAAGGTGATTCAGTGAATCGCTTATTTGGAATCTTCAATGCAATTGCTATCATTGCCACGACTTATGGAAATGGAATCATTCCAGAAATTCAGgtttgaaacaatttgtccccctctaattcagctcacgtat--ggttcaatcaaattaatcattgtgtaattaaaaacaactcatttcctttcattattattc
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161715769|gb|FC066173.1|FC066173
EST:     TTGCTATCATTGCCACAACATTTGGGAATGGTATCATCCCTGAAATTCAG                         GCAACGCTGGCACCACCAATGAAGGGGAAGATGTTCAAGGGACTGTGCATT
genomic: TTGCTATCATTGCCACAACATTTGGGAATGGTATCATCCCTGAAATTCAGgtttgtggtt ... ttggttgcagGCAACGCTGGCACCACCAGTGAAGGGGAAGATGTTCAAGGGACTGTGCATT