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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTGAGGCCCTTTAACTGGATTGGGCCCAGAATGGATTTTATTCCTGGCATTGATGGTCCTAGCGAGGGCGTTCCAAGGGTTCTGGCATGCTTCAGTAATgttagtttcaacatctgtcataacatttagtagtattttttttctttttcttactactgatcttgctctttttctcccacaatag

Basic information

species Vitis vinifera
transcript Vv06s0061g01120.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0061g01120.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: LOC_Os01g73790.1 (Oryza sativa), 5'ss of exon 5
TGTGAGGCCCTTTAACTGGATTGGGCCCAGAATGGATTTTATTCCTGGCATTGATGGTCCTAGCGAGGGCGTTCCAAGGGTTCTGGCATGCTTCAGTAATgttagtttcaacatctgtcataacatttagtagtattttttttctttttcttactactgatcttgctctttttctcccacaatag--------
|||||| || || || |||||||| || |||||||| |||||||||||  ||||||||||||| ||||| |||||  ||||| ||||||| |||||||| ||  ||       ||  |         || ||    |   |||| || |  |  |  |  || |    | | | || | ||||          
TGTGAGACCTTTCAATTGGATTGGACCAAGAATGGACTTTATTCCTGGTGTTGATGGTCCTAGTGAGGGTGTTCCTCGGGTTTTGGCATGTTTCAGTAACgtatgtcaaccagtccctttctgagaataatatacctccatttcgttatggtcgtttttctcataagatgtatgtcgc-caatgaatttgcag

upper sequence: Vv06s0061g01120.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G167872_T02 (Zea mays), 5'ss of exon 3
TGTGAGGCCCTTTAACTGGATTGGGCCCAGAATGGATTTTATTCCTGGCATTGATGGTCCTAGCGAGGGCGTTCCAAGGGTTCTGGCATGCTTCAGTAATgttagtttcaacatctgtcataacatttagtagtattttttttctttttcttactactg-atcttgctctttttctcccacaatag------------
 ||||| || ||||| ||||||||||| || |||||||| ||||||||  | ||||||||||| ||||| || ||  |||| ||||| ||||||||||| ||  ||     ||  |||  |   ||||| |  |  |   | |  ||  |||| |  || | | |    || ||||   |  ||              
CGTGAGACCTTTTAATTGGATTGGGCCAAGGATGGATTTCATTCCTGGTGTCGATGGTCCTAGTGAGGGTGTACCCCGGGTGCTGGCTTGCTTCAGTAACgtatgt----gcacttgtttttttatttatt--ttctgagtatggttggcttaattttgcaccatagcattcttctgagaagatgcatggttttgcag

upper sequence: Vv06s0061g01120.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA12G08930.1 (Glycine max), 5'ss of exon 5
TGTGAGGCCCTTTAACTGGATTGGGCCCAGAATGGATTTTATTCCTGGCATTGATGGTCCTAGCGAGGGCGTTCCAAGGGTTCTGGCATGCTTCAGTAATgttagtttca-acatctgtcat-----aacatttagtagtattttttttctttttc-----ttactactgatcttgctctttttctcccacaatag
||||||||| |||||||||||||| ||  |||||||||| |||||||||||||||||||| || ||||| |||||  ||||||| |||||||| || ||||| |||| |  || | ||  ||     |   |||||  |  |||        |||      ||  | |  |  || || |||| ||    |   ||
TGTGAGGCCTTTTAACTGGATTGGACCTCGAATGGATTTCATTCCTGGCATTGATGGTCCAAGTGAGGGTGTTCCTCGGGTTCTTGCATGCTTTAGCAATgtcagttacttacttttgctatgttgaagtttttagatgattttagccagagttttgaaaatttgttcaaaattttctgttttcctttgtctgcag

upper sequence: Vv06s0061g01120.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA17G05440.1 (Glycine max), 5'ss of exon 3
TGTGAGGCCCTTTAACTGGATTGGGCCCAGAATGGATTTTATTCCTGGCATTGATGGTCCTAGCGAGGGCGTTCCAAGGGTTCTGGCATGCTTCAGTAATgttagtttcaacatctgtcataacatttagtagtattttttttctttttcttactactgatcttgctctttttctcccacaatag----------------------
|||||| || ||||| |||||||| ||  |||||||||| ||||| |||||||||||||| || ||||| |||||  |||||||||||||||| || ||||| |||||  |  |   |    || ||   ||   || | | | || || ||| |    || ||    |  |  | | | ||||                       
TGTGAGACCTTTTAATTGGATTGGACCACGAATGGATTTCATTCCCGGCATTGATGGTCCAAGTGAGGGTGTTCCTCGGGTTCTGGCATGCTTTAGCAATgtgagtttacattttgatttagactttgtttaagcttgtatatattgttgttagtcaatatttttaaataatgattcta-aatattttcttcatttcttttctgtag

upper sequence: Vv06s0061g01120.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA12G30490.2 (Glycine max), 5'ss of exon 5
TGTGAGGCCCTTTAACTGGATTGGGCCCAGAATGGATTTTATTCCTGGCATTGATGGTCCTAGCGAGGGCGTTCCAAGGGTTCTGGCATGCTTCAGTAATgttagtttcaacatctgtcataac---atttag--tagtattttttttctt-----tttcttactactgatcttgctctttttctcccacaatag-------
||||||||| ||||| |||||||| ||  |||||||||| ||||| ||||||||||| || || ||||| |||||  |||||||||||||||| || ||||| |||||  |  |   |    ||    ||||   | |||| | | ||  |     ||| |   || ||||  |     ||||||||     |         
TGTGAGGCCTTTTAATTGGATTGGACCACGAATGGATTTCATTCCCGGCATTGATGGCCCAAGTGAGGGTGTTCCTCGGGTTCTGGCATGCTTTAGCAATgtgagtttacattttgatttagactttgtttaagcttgtatatatgttactcgatatttttggataatgattctaaatattttctccattccttttctgtag

upper sequence: Vv06s0061g01120.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA11G19550.1 (Glycine max), 5'ss of exon 5
TGTGAGGCCCTTTAACTGGATTGGGCCCAGAATGGATTTTATTCCTGGCATTGATGGTCCTAGCGAGGGCGTTCCAAGGGTTCTGGCATGCTTCAGTAATgttagtttca-acatctgtcataacatttagtagtattttttt--tctttt---------tcttactact-----gatcttgctctttttctcccacaatag
||| ||||| |||||||||||||| ||  |||||||||| |||||||| ||||||||||| || ||||| |||||  ||||||| || ||||| || ||||| |||| |  || | ||  ||  | ||| || | | ||| ||  | ||||         | | |  | |      |  || || |||| ||    |   ||
TGTAAGGCCATTTAACTGGATTGGACCTCGAATGGATTTCATTCCTGGGATTGATGGTCCAAGTGAGGGTGTTCCTCGGGTTCTTGCTTGCTTTAGCAATgtcagttacttacttttgctattgctttttgttgaagtttgttgatattttagccggagttttgaaaatttgttcaaattttctgttttcctttgtctgcag

upper sequence: Vv06s0061g01120.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: AT1G08200.1 (Arabidopsis thaliana), 5'ss of exon 5
TGTGAGGCCCTTTAACTGGATTGGGCCCAGAATGGATTTTATTCCTGGCATTGATGGTCCTAGCGAGGGCGTTCCAAGGGTTCTGGCATGCTTCAGTAATgttagttt-caacatctgtcataacatttagtagtattttttttctttttcttactactgatcttgctctttttctcccacaatag---
||| || || || ||||||||||| || || |||||||| || |||||||||||||||||||||||||| || ||| ||||||| || ||||| ||||| || ||| | ||   |  |||  |  |  |       | |  |  ||    ||||    |  | ||   ||||||       | |     
TGTAAGACCATTCAACTGGATTGGACCTAGGATGGATTTCATCCCTGGCATTGATGGTCCTAGCGAGGGTGTCCCACGGGTTCTAGCGTGCTTTAGTAACgtaagtatacaggcttagtccaatgacctgagttcttctcatggctgcagcttaacttttttgtttaactttttggtgggtattttcag

upper sequence: Vv06s0061g01120.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: AT2G27860.1 (Arabidopsis thaliana), 5'ss of exon 5
TGTGAGGCCCTTTAACTGGATTGGGCCCAGAATGGATTTTATTCCTGGCATTGATGGTCCTAGCGAGGGCGTTCCAAGGGTTCTGGCATGCTTCAGTAATgttagt-ttcaacatctgtcataacatttagtagtattttttttcttttt-----cttactactgatcttgctctttttctcccacaatag
 ||  | || |||||||||||||| || || |||||||| || || |||||||||||||||||||| || || ||| | || || || ||||| ||||| || ||| |||||   |    |||  |   | |  || | | | | | | |     |||     | ||    |||| | | ||   ||    
CGTACGACCTTTTAACTGGATTGGACCTAGGATGGATTTCATCCCCGGCATTGATGGTCCTAGCGAAGGTGTCCCACGTGTCCTTGCCTGCTTTAGTAACgtaagtgttcaaatccaagtatataacccaatgctagtctgtgtatatatgcaagcttttagttaatgcatctctatctatctttcag---

upper sequence: Vv06s0061g01120.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: EFJ18978 (Selaginella moellendorffii), 5'ss of exon 5
TGTGAGGCCCTTTAACTGGATTGGGCCCAGAATGGATTTTATTCCTGGCATTGATGGTCCTAGCGAGGGCGTTCCAAGGGTTCTGGCATGCTTCAGTA----ATgttagtttcaacatctgtcataacatttagtagtattttttttctttttcttactactgatcttgctctttttctcccacaatag
 ||  | ||||| ||||||||||||||  | |||||||||||||| || || ||||| || ||||| ||||| ||||| ||| |||| ||||||||||    |||  ||   | |||| |    |    | |||   ||||  | || | |  |   |||||  | || ||    | |           
CGTACGTCCCTTCAACTGGATTGGGCCACGGATGGATTTTATTCCCGGGATCGATGGGCCAAGCGAAGGCGTACCAAGAGTTTTGGCTTGCTTCAGTACGgtatgcaagccaccacattt-ctgtggagtctagc--tattgatgttatgtgacgagctactt-tattacttccgtgcag---------

upper sequence: Vv06s0061g01120.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: EFJ07025 (Selaginella moellendorffii), 5'ss of exon 5
TGTGAGGCCCTTTAACTGGATTGGGCCCAGAATGGATTTTATTCCTGGCATTGATGGTCCTAGCGAGGGCGTTCCAAGGGTTCTGGCATGCTTCAGTAATgttagtttcaacatctgtcataacatttagtagtattttttttctttttcttac-tactgatcttgctctttttctcccacaatag
 ||  | ||||| ||||||||||||||  | |||||||||||||| || || ||||| || ||||| ||||| ||||| ||| |||| ||||||||||  ||        |     | ||  ||||||    | ||| |   | ||  | |||  |   || ||  || | || || ||     ||
CGTACGTCCCTTCAACTGGATTGGGCCACGGATGGATTTTATTCCCGGGATCGATGGGCCAAGCGAAGGCGTACCAAGAGTTTTGGCTTGCTTCAGTACGgt--------atgcaagccaccacatttctgtggattctagctattggtgttatgtgacgagct-actttattacttccgtg-cag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110723284|gb|EE100418.1|EE100418
EST:     TTGATGGTCCTAGCGAGGGCGTTCCAGGGGT-CTGGCATGCTTCANTAAT                         AAC-TTCNTCGTCATGAGCC
genomic: TTGATGGTCCTAGCGAGGGCGTTCCAAGGGTTCTGGCATGCTTCAGTAATgttagtttca ... cccacaatagAACCTTCTTCGTCATGAGCC
EST: gi|110405386|gb|EC970927.1|EC970927
EST:     TTGATGGTCCTAGCGAGGGCGTTCCAAGGGTTCTGGCATGCTTCAGTAAT                         AACCTTCTTCGTCATGAGCCACTCAAGCTTGTGGATGGTGGCCAATCCCAG
genomic: TTGATGGTCCTAGCGAGGGCGTTCCAAGGGTTCTGGCATGCTTCAGTAATgttagtttca ... cccacaatagAACCTTCTTCGTCATGAGCCACTCAAGCTTGTGGATGGTGGCCAATCCCAG
EST: gi|30298239|gb|CB975033.1|CB975033
EST:     AGGGCGTTCCAAGGGTTCTGGCATGCTTCAGTAAT                         AACCTTCTTCGTCATGAGCCGCTCAAGCTTGTGGATGGTGGCCAATCCCAG
genomic: AGGGCGTTCCAAGGGTTCTGGCATGCTTCAGTAATgttagtttca ... cccacaatagAACCTTCTTCGTCATGAGCCACTCAAGCTTGTGGATGGTGGCCAATCCCAG
EST: gi|71884664|gb|DT033719.1|DT033719
EST:     TTGATGGTCCCAGCGAGGGCGTTCCAAGGGTTCTGGCATGCTTCAGTAAT                         AACCTTCTTCGTCATGAGCCGCTCAAGCTTGTGGATGGTGGCCAATCCCAG
genomic: TTGATGGTCCTAGCGAGGGCGTTCCAAGGGTTCTGGCATGCTTCAGTAATgttagtttca ... cccacaatagAACCTTCTTCGTCATGAGCCACTCAAGCTTGTGGATGGTGGCCAATCCCAG
EST: gi|33401793|gb|CF207420.1|CF207420
EST:     TTGATGGTCCCAGCGAGGGCGTTCCAAGGGTTCTGGCATGCTTCAGTAAT                         AACCTTCTTCGTCATGAGCCGCTCAAGCTTGTGGATGGTGGCCAATCCCAG
genomic: TTGATGGTCCTAGCGAGGGCGTTCCAAGGGTTCTGGCATGCTTCAGTAATgttagtttca ... cccacaatagAACCTTCTTCGTCATGAGCCACTCAAGCTTGTGGATGGTGGCCAATCCCAG
EST: gi|71882410|gb|DT031465.1|DT031465
EST:     TTGATGGTCCCAGCGAGGGCGTTCCAAGGGTTCTGGCATGCTTCAGTAAT                         AACCTTCTTCGTCATGAGCCGCTCAAGCTTGTGGATGGTGGCCAATCCCAG
genomic: TTGATGGTCCTAGCGAGGGCGTTCCAAGGGTTCTGGCATGCTTCAGTAATgttagtttca ... cccacaatagAACCTTCTTCGTCATGAGCCACTCAAGCTTGTGGATGGTGGCCAATCCCAG
EST: gi|71858870|gb|DT007925.1|DT007925
EST:     TTGATGGTCCCAGCGAGGGCGTTCCAAGGGTTCTGGCATGCTTCAGTAAT                         AACCTTCTTCGTCATGAGCC
genomic: TTGATGGTCCTAGCGAGGGCGTTCCAAGGGTTCTGGCATGCTTCAGTAATgttagtttca ... cccacaatagAACCTTCTTCGTCATGAGCC
EST: gi|110713549|gb|EE089565.1|EE089565
EST:     TTGATGGTCCTAGCGAGGGCGTTCCAAGGGTTCTGGCATGCTTCANTAAT                         AACCTTCTTCGTCATGAGCCACT
genomic: TTGATGGTCCTAGCGAGGGCGTTCCAAGGGTTCTGGCATGCTTCAGTAATgttagtttca ... cccacaatagAACCTTCTTCGTCATGAGCCACT
EST: gi|33402259|gb|CF207886.1|CF207886
EST:     TTGATGGTCCTAGCGAGGGCGTTCCAAGGGTTCTGGCATGCTTCGGTAAT                         AACCTTCTTCGTCATGAGCCACTCAAGCTTGTGGATGGTGGCCAATCCCAG
genomic: TTGATGGTCCTAGCGAGGGCGTTCCAAGGGTTCTGGCATGCTTCAGTAATgttagtttca ... cccacaatagAACCTTCTTCGTCATGAGCCACTCAAGCTTGTGGATGGTGGCCAATCCCAG
EST: gi|71868252|gb|DT017307.1|DT017307
EST:     TTGATGGTCCTAGCGAGGGCGTTCCAAGGGTTCTGGCATGCTTCAGTAAT                         AACCTTCTTCGTCATGAGCCACTCAAGCTTGTGGATGGTGGCCAATCCCAG
genomic: TTGATGGTCCTAGCGAGGGCGTTCCAAGGGTTCTGGCATGCTTCAGTAATgttagtttca ... cccacaatagAACCTTCTTCGTCATGAGCCACTCAAGCTTGTGGATGGTGGCCAATCCCAG
EST: gi|349828491|gb|FQ417233.1|FQ417233
EST:     TTGATGGTCCTAGCGAGGGCGTTCCAAGGGTTCTGGCGTGCTTCAGTAAT                         AACCTTCTTCGTCATGAGCCACTCAAGCTTGTGGATGGTGGCCAATCCCAG
genomic: TTGATGGTCCTAGCGAGGGCGTTCCAAGGGTTCTGGCATGCTTCAGTAATgttagtttca ... cccacaatagAACCTTCTTCGTCATGAGCCACTCAAGCTTGTGGATGGTGGCCAATCCCAG
EST: gi|71884313|gb|DT033368.1|DT033368
EST:     TTGATGGTCCCAGCGAGGGCGTTCCAAGGGTTCTGGCATGCTTCAGTAAT                         AACCTTCTTCGTCATGAGCCGCTCAAGCTTGTGGATGGTGGCCAATCCCAG
genomic: TTGATGGTCCTAGCGAGGGCGTTCCAAGGGTTCTGGCATGCTTCAGTAATgttagtttca ... cccacaatagAACCTTCTTCGTCATGAGCCACTCAAGCTTGTGGATGGTGGCCAATCCCAG
EST: gi|22007527|gb|BQ792561.1|BQ792561
EST:     TTGAT-GTCCTAGCGA-GGCGTTCCAA-GGTTCTGGCATGCTTCAGTAAT                         AACCTTTTTCGTCATGAGCCACTCAAGCTTGTGGATGGTGGCCAATCCCAG
genomic: TTGATGGTCCTAGCGAGGGCGTTCCAAGGGTTCTGGCATGCTTCAGTAATgttagtttca ... cccacaatagAACCTTCTTCGTCATGAGCCACTCAAGCTTGTGGATGGTGGCCAATCCCAG
EST: gi|33404942|gb|CF210569.1|CF210569
EST:     TTGATGGTCCCAGCGAGGGCGTTCCAAGGGTTCTGGCATGCTTCAGTAAT                         AACCTTCTTCGTCATGAGCCGCTCAAGCTTGTGGATGGTGGCCAATCCCAG
genomic: TTGATGGTCCTAGCGAGGGCGTTCCAAGGGTTCTGGCATGCTTCAGTAATgttagtttca ... cccacaatagAACCTTCTTCGTCATGAGCCACTCAAGCTTGTGGATGGTGGCCAATCCCAG
EST: gi|110397475|gb|EC963215.1|EC963215
EST:     TTGATGGTCCCAGCGAGGGCGTTCCAAGGGTTCTGGCATGCTTCAGTAAT                         AACCTTCTTCGTCATGAGCCGCTCAAGCTTGTGGATGGTGGCCAATCCCAG
genomic: TTGATGGTCCTAGCGAGGGCGTTCCAAGGGTTCTGGCATGCTTCAGTAATgttagtttca ... cccacaatagAACCTTCTTCGTCATGAGCCACTCAAGCTTGTGGATGGTGGCCAATCCCAG
EST: gi|110420047|gb|EC986308.1|EC986308
EST:     TTGATGGTCCTAGCGAGGGCGTTCCAAGGGTTCTGGCATGCTTCAGTAAT                         AACCTTCTTCGTCATGAGCCACTCAAGCTTGTGGATGGTGGCCAATCCCAG
genomic: TTGATGGTCCTAGCGAGGGCGTTCCAAGGGTTCTGGCATGCTTCAGTAATgttagtttca ... cccacaatagAACCTTCTTCGTCATGAGCCACTCAAGCTTGTGGATGGTGGCCAATCCCAG
EST: gi|71890357|gb|DT039412.1|DT039412
EST:     TTGATGGTCCCAGCGAGGGCGTTCCAAGGGTTCTGGCATGCTTCAGTAAT                         AACCTTCTTCGTCATGAGCCGCTCAAGCTTGTGGATGGTGGCCAATCCCAG
genomic: TTGATGGTCCTAGCGAGGGCGTTCCAAGGGTTCTGGCATGCTTCAGTAATgttagtttca ... cccacaatagAACCTTCTTCGTCATGAGCCACTCAAGCTTGTGGATGGTGGCCAATCCCAG
EST: gi|37187419|gb|CF606772.1|CF606772
EST:     TTGATGGTCCTAGCGAGGGCGTTCCAAGGGTTCTGGCATGCTTCAGTAAT                         AACCTTCTTCGTCATGAGCCACTCAAGCTTGTGGATGGTGGCCAATCCCAG
genomic: TTGATGGTCCTAGCGAGGGCGTTCCAAGGGTTCTGGCATGCTTCAGTAATgttagtttca ... cccacaatagAACCTTCTTCGTCATGAGCCACTCAAGCTTGTGGATGGTGGCCAATCCCAG
EST: gi|110396028|gb|EC961702.1|EC961702
EST:     TTGATGGTCCTAGCGAGGGCGTTCCAAGGGTTCTGGCATGCTTCAGTAAT                         AACCTTCTTCGTCATGAGCCACTCAAGCTTGTGGATGGTGGCCAATCCCAG
genomic: TTGATGGTCCTAGCGAGGGCGTTCCAAGGGTTCTGGCATGCTTCAGTAATgttagtttca ... cccacaatagAACCTTCTTCGTCATGAGCCACTCAAGCTTGTGGATGGTGGCCAATCCCAG
EST: gi|110371215|gb|EC935056.1|EC935056
EST:     TTGATGGTCCTAGCGAGGGCGTTCCAAGGGTTCTGGCATGCTTCAGTAAT                         AACCTTCTTCGTCATGAGCCACTCAAGCTTGTGGATGGTGGCCAATCCCAG
genomic: TTGATGGTCCTAGCGAGGGCGTTCCAAGGGTTCTGGCATGCTTCAGTAATgttagtttca ... cccacaatagAACCTTCTTCGTCATGAGCCACTCAAGCTTGTGGATGGTGGCCAATCCCAG
EST: gi|71888796|gb|DT037851.1|DT037851
EST:     TTGATGGTCCTAGCGAGGGCGTTCCAAGGGTTCTGGCATGCTTCAGTAAT                         AACCTTCTTCGTCATGAGCCACTCAAGCTTGTGGATGGTGGCCAATCCCAG
genomic: TTGATGGTCCTAGCGAGGGCGTTCCAAGGGTTCTGGCATGCTTCAGTAATgttagtttca ... cccacaatagAACCTTCTTCGTCATGAGCCACTCAAGCTTGTGGATGGTGGCCAATCCCAG
EST: gi|71885129|gb|DT034184.1|DT034184
EST:     TTGATGGTCCTAGCGAGGGCGTTCCAAGGGTTCTGGCATGCTTCAGTAAT                         AACCTTCTTCGTCATGAGCCACTCAAGCTTGTGGATGGTGGCCAATC
genomic: TTGATGGTCCTAGCGAGGGCGTTCCAAGGGTTCTGGCATGCTTCAGTAATgttagtttca ... cccacaatagAACCTTCTTCGTCATGAGCCACTCAAGCTTGTGGATGGTGGCCAATC