Sequence
atgc intronic sequence ATGC exonic sequenceTGCAACGTGCTGAGGCTCAGTTTTCTCATGGAATAGCTGATAATTTAGATGATCCTAAATATGCCCATTATAAGTACTGGTCCAATCCACTGGAGACCAAgtgagtatccacacctaacttcggaagaagttgcatataaacaggcacatatagttgaaacattttagggtgatactcagatactgatatgtgtttcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0061g01110.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA12G08920.1 (Glycine max), 5'ss of exon 8
TGCAACGTGCTGAGGCTCAGTTTTCTCATGGAATAGCTGATAATTTAGATGATCCTAAATATGCCCATTATAAGTACTGGTCCAATCCACTGGAGACCAAgtgagtatccacacctaa--cttcggaagaagttgcatataaacaggcacatatagttgaaacattttagggtgatactcagatactgatatgtgtttcag
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TGAAGCGTGCTGAGGCTCACTTCTCTCACGGGATAGCAGAGAACTTAGAAGATCCTAAATATGCTCATTACAGATACTGGTCTAATCCACTTGAAACCAAgtatgtatattcatgaaatacttttgactagtttttccttaaaagattcagtggcattcctttaattttgacacaacttttcatagttattcaagttccc-
upper sequence: Vv06s0061g01110.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA11G19570.1 (Glycine max), 5'ss of exon 7
TGCAACGTGCTGAGGCTCAGTTTTCTCATGGAATAGCTGATAATTTAGATGATCCTAAATATGCCCATTATAAGTACTGGTCCAATCCACTGGAGACCAAgtgagt----atccacacctaacttcggaagaagttgcatataaacaggcacatatagttgaaacattttagggtgatactcagatactgatatgtgtttcag
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TGAAGCGTGGTGAGGCTCACTTCTCTCACGGAATAGCAAAGAACTTAGATGATCCAAAATATGCTCACCACAAATACTGGTCTAATCCTCTTGAGACCAAgtaagtgtagattcatgaaatacttttaactagttttttcttaaaagattctgtaacattcctttaactttgacacaaactttcatagttattcagacat---Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110718219|gb|EE094804.1|EE094804EST: GATCCTAAATATGCCCATTATAAGTACTGGTCCAATCCACTGGAGACCAA GTTGCCTGATGCCCCAGATATGGAAATTTACTGTTTATACGGTGTTGGACT
genomic: GATCCTAAATATGCCCATTATAAGTACTGGTCCAATCCACTGGAGACCAAgtgagtatcc ... tgtgtttcagGTTGCCTGATGCCCCAGATATGGAAATTTACTGTTTATACGGTGTTGGACT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGCAACGTGCTGAGGCTCAGTTTTCTCATGGAATAGCTGATAATTTAGATGATCCTAAATATGCCCATTATAAGTACTGGTCCAATCCACTGGAGACCAAgtgagtatccacacctaacttcggaagaagttgcatataaacaggcacatatagttgaaacattttagggtgatactcagatactgatatgtgtttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA