Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTTACTGCTCAAGATCTTACTGACATAATTAAGGCCCAGCTACAGAGgtactcttttcctatatattcaggtttatgatgctgatatatgtcatttttacaagcattgaaacacactgaaaatttcaagcagtcccaaactatatgt...

Basic information

species Vitis vinifera
transcript Vv06s0061g00770.t01
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351043093|gb|FQ451266.1|FQ451266
EST:     TGTTACTGCTCAAGATCTTACTGACATAATTAAGGCCCAGCTACAGAG                         GGATGTGGACAAGCGAATTGTCTCTCTTCCAGAGATTCGGGAAACAGGGGA
genomic: TGTTACTGCTCAAGATCTTACTGACATAATTAAGGCCCAGCTACAGAGgtactctttt ... tattttatagGGATGTGGACAAGCGAATTGTCTCTCTTCCAGAGATTCGGGAAACAGGGGA
EST: gi|349821779|gb|FQ408217.1|FQ408217
EST:     TGTTACTGCTCAAGATCTTACTGACATAATTAAGGCCCAGCTACAGAG                         GGATGTGGACAAGCGAATTGTCTCTCTTCCAGAGATTCGGGAAACAGGGGA
genomic: TGTTACTGCTCAAGATCTTACTGACATAATTAAGGCCCAGCTACAGAGgtactctttt ... tattttatagGGATGTGGACAAGCGAATTGTCTCTCTTCCAGAGATTCGGGAAACAGGGGA
EST: gi|26258124|gb|CA809187.1|CA809187
EST:     TGTTACTGCTCAAGATCTTACTGACATAATTAAGGCCCAGCTACAGAG                         GGATGTGGACAAGCGAATTGTCTCTCTTCCAGAGATTCGGGAAACAGGGGA
genomic: TGTTACTGCTCAAGATCTTACTGACATAATTAAGGCCCAGCTACAGAGgtactctttt ... tattttatagGGATGTGGACAAGCGAATTGTCTCTCTTCCAGAGATTCGGGAAACAGGGGA
EST: gi|351012777|gb|FQ430340.1|FQ430340
EST:     TGTTACTGCTCAAGATCTTACTGACATAATTAAGGCCCAGCTACAGAG                         GGATGTGGACAAGCGAATTGTCTCTCTTCCAGAGATTCGGGAAACAGGGGA
genomic: TGTTACTGCTCAAGATCTTACTGACATAATTAAGGCCCAGCTACAGAGgtactctttt ... tattttatagGGATGTGGACAAGCGAATTGTCTCTCTTCCAGAGATTCGGGAAACAGGGGA
EST: gi|26258538|gb|CA809601.1|CA809601
EST:     TGTTACTGCTCAAGATCTTACTGACATAATTAAGGCCCAGCTACAGAG                         GGATGTGGACAAGCGAATTGTCTCTCTTCCAGAGATTCGGGAAACAGGGGA
genomic: TGTTACTGCTCAAGATCTTACTGACATAATTAAGGCCCAGCTACAGAGgtactctttt ... tattttatagGGATGTGGACAAGCGAATTGTCTCTCTTCCAGAGATTCGGGAAACAGGGGA
EST: gi|26257065|gb|CA808128.1|CA808128
EST:     TGTTACTGCTCAAGATCTTACTGACATAATTAAGGCCCAGCTACAGAG                         GGATGTGGACAAGCGAATTGTCTCTCTTCCAGAGATTCGGGAAACAGGGGA
genomic: TGTTACTGCTCAAGATCTTACTGACATAATTAAGGCCCAGCTACAGAGgtactctttt ... tattttatagGGATGTGGACAAGCGAATTGTCTCTCTTCCAGAGATTCGGGAAACAGGGGA
EST: gi|349816214|gb|FQ403710.1|FQ403710
EST:     TGTTACTGCTCAAGATCTTACTGACATAATTAAGGCCCAGCTACAGAG                         GGATGTGGACAAGCGAATTGTCTCTCTTCCAGAGATTCGGGAAACAGGGGA
genomic: TGTTACTGCTCAAGATCTTACTGACATAATTAAGGCCCAGCTACAGAGgtactctttt ... tattttatagGGATGTGGACAAGCGAATTGTCTCTCTTCCAGAGATTCGGGAAACAGGGGA
EST: gi|349809399|gb|FQ411897.1|FQ411897
EST:     TGTTACTGCTCAAGATCTTACTGACATAATTAAGGCCCAGCTACAGAG                         GGATGTGGACAAGCGAATTGTCTCTCTTCCAGAGATTCGGGAAACAGGGGA
genomic: TGTTACTGCTCAAGATCTTACTGACATAATTAAGGCCCAGCTACAGAGgtactctttt ... tattttatagGGATGTGGACAAGCGAATTGTCTCTCTTCCAGAGATTCGGGAAACAGGGGA
EST: gi|349818014|gb|FQ408003.1|FQ408003
EST:     TGTTACTGCTCAAGATCTTACTGACATAATTAAGGCCCAGCTACAGAG                         GGATGTGGACAAGCGAATTGTCTCTCTTCCAGAGATTCGGGAAACAGGGGA
genomic: TGTTACTGCTCAAGATCTTACTGACATAATTAAGGCCCAGCTACAGAGgtactctttt ... tattttatagGGATGTGGACAAGCGAATTGTCTCTCTTCCAGAGATTCGGGAAACAGGGGA
EST: gi|349827458|gb|FQ422326.1|FQ422326
EST:     TGTTACTGCTCAAGATCTTACTGACATAATTAAGGCCCAGCTACAGAG                         GGATGTGGACAAGCGAATTGTCTCTCTTCCAGAGATTCGGGAAACAGGGGA
genomic: TGTTACTGCTCAAGATCTTACTGACATAATTAAGGCCCAGCTACAGAGgtactctttt ... tattttatagGGATGTGGACAAGCGAATTGTCTCTCTTCCAGAGATTCGGGAAACAGGGGA
EST: gi|349824659|gb|FQ413326.1|FQ413326
EST:     TGTTACTGCTCAAGACCTTACTGACATAATTAAGGCCCAGCTACAGAG                         GGATGTGGACAAGCGAATTGTCTCTCTTCCAGAGATTCGGGAAACAGGGGA
genomic: TGTTACTGCTCAAGATCTTACTGACATAATTAAGGCCCAGCTACAGAGgtactctttt ... tattttatagGGATGTGGACAAGCGAATTGTCTCTCTTCCAGAGATTCGGGAAACAGGGGA
EST: gi|349825958|gb|FQ415763.1|FQ415763
EST:     TGTTACTGCTCAAGATCTTACTGACATAATTAAGGCCCAGCTACAGAG                         GGATGTGGACAAGCGAATTGTCTCTCTTCCAGAGATTCGGGAAACAGGGGA
genomic: TGTTACTGCTCAAGATCTTACTGACATAATTAAGGCCCAGCTACAGAGgtactctttt ... tattttatagGGATGTGGACAAGCGAATTGTCTCTCTTCCAGAGATTCGGGAAACAGGGGA
EST: gi|349820988|gb|FQ404241.1|FQ404241
EST:     TGTTACTGCTCAAGATCTTACTGACATAATTAAGGCCCAGCTACAGAG                         GGATGTGGACAAGCGAATTGTCTCTCTTCCAGAGATTCGGGAAACAGGGGA
genomic: TGTTACTGCTCAAGATCTTACTGACATAATTAAGGCCCAGCTACAGAGgtactctttt ... tattttatagGGATGTGGACAAGCGAATTGTCTCTCTTCCAGAGATTCGGGAAACAGGGGA
EST: gi|32250371|gb|CD716190.1|CD716190
EST:     TGTTACTGCTCAAGATCTTACTGACATAATTAAGGCCCAGCTACAGAG                         GGATGTGGACGAGCGAATTGTCTCTCTTCCAGAGATTCGGGAAACATGGGA
genomic: TGTTACTGCTCAAGATCTTACTGACATAATTAAGGCCCAGCTACAGAGgtactctttt ... tattttatagGGATGTGGACAAGCGAATTGTCTCTCTTCCAGAGATTCGGGAAACAGGGGA
EST: gi|351040587|gb|FQ438131.1|FQ438131
EST:     TGTTACTGCTCAAGATCTTACTGACATAATTAAGGCCCAGCTACAGAG                         GGATGTGGACAAGCGAATTGTCTCTCTTCCAGAGATTCGGGAAACAGGGGA
genomic: TGTTACTGCTCAAGATCTTACTGACATAATTAAGGCCCAGCTACAGAGgtactctttt ... tattttatagGGATGTGGACAAGCGAATTGTCTCTCTTCCAGAGATTCGGGAAACAGGGGA
EST: gi|351029352|gb|FQ436746.1|FQ436746
EST:     TGTTACTGCTCAAGATCTTACTGACATAATTAAGGCCCAGCTACAGAG                         GGATGTGGACAAGCGAATTGTCTCTCTTCCAGAGATTCGGGAAACAGGGGA
genomic: TGTTACTGCTCAAGATCTTACTGACATAATTAAGGCCCAGCTACAGAGgtactctttt ... tattttatagGGATGTGGACAAGCGAATTGTCTCTCTTCCAGAGATTCGGGAAACAGGGGA
EST: gi|28958827|gb|CB339413.1|CB339413
EST:     TGTTACTGCTCAAGATCTTACTGACATAATTAAGGCCCAGCTACAGAG                         GGATGTGGACAAGTGAATTGTCTCTCTTCCAGAGATTCGGGAAACAGGGGA
genomic: TGTTACTGCTCAAGATCTTACTGACATAATTAAGGCCCAGCTACAGAGgtactctttt ... tattttatagGGATGTGGACAAGCGAATTGTCTCTCTTCCAGAGATTCGGGAAACAGGGGA
EST: gi|349817273|gb|FQ405277.1|FQ405277
EST:     TGTTACTGCTCAAGATCTTACTGACATAATTAAGGCCCAGCTACAGAG                         GGATGTGGACAAGCGAATTGTCTCTCTTCCAGAGATTCGGGAAACAGGGGA
genomic: TGTTACTGCTCAAGATCTTACTGACATAATTAAGGCCCAGCTACAGAGgtactctttt ... tattttatagGGATGTGGACAAGCGAATTGTCTCTCTTCCAGAGATTCGGGAAACAGGGGA
EST: gi|34320179|gb|CF372933.1|CF372933
EST:     TGTTACTGCTCAAGATCTTACTGACATAATTAAGGCCCAGCTACAGAG                         GGATGTGGACAAGCGAATTGTCTCTCTTCCAGAGATTCGGGAAACAGGGGA
genomic: TGTTACTGCTCAAGATCTTACTGACATAATTAAGGCCCAGCTACAGAGgtactctttt ... tattttatagGGATGTGGACAAGCGAATTGTCTCTCTTCCAGAGATTCGGGAAACAGGGGA
EST: gi|351041640|gb|FQ455850.1|FQ455850
EST:     TGTTACTGCTCAAGATCTTACTGACATAATTAAGGCCCAGCTACAGAG                         GGATGTGGACAAGCGAATTGTCTCTCTTCCAGAGATTCGGGAAACAGGGGA
genomic: TGTTACTGCTCAAGATCTTACTGACATAATTAAGGCCCAGCTACAGAGgtactctttt ... tattttatagGGATGTGGACAAGCGAATTGTCTCTCTTCCAGAGATTCGGGAAACAGGGGA
EST: gi|349820586|gb|FQ404081.1|FQ404081
EST:     TGTTACTGCTCAAGATCTTACTGACATAATTAAGGCCCAGCTACAGAG                         GGATGTGGACAAGCGAATTGTCTCTCTTCCAGAGATTCGGGAAACAGGGGA
genomic: TGTTACTGCTCAAGATCTTACTGACATAATTAAGGCCCAGCTACAGAGgtactctttt ... tattttatagGGATGTGGACAAGCGAATTGTCTCTCTTCCAGAGATTCGGGAAACAGGGGA
EST: gi|349818183|gb|FQ408958.1|FQ408958
EST:     TGTTACTGCTCAAGATCTTACTGACATAATTAAGGCCCAGCTACAGAG                         GGATGTGGACAAGCGAATTGTCTCTCTTCCAGAGATTCGGGAAACAGGGGA
genomic: TGTTACTGCTCAAGATCTTACTGACATAATTAAGGCCCAGCTACAGAGgtactctttt ... tattttatagGGATGTGGACAAGCGAATTGTCTCTCTTCCAGAGATTCGGGAAACAGGGGA
EST: gi|110710654|gb|EE086980.1|EE086980
EST:     TGTTACTGCTCAAGATCTTACTGACATAATTAAGGCCCAGCTACAGAG                         GGATGTGGACAAGCGAATTGTCTCTCTTCCAGAGATTCGGGAAACAGGGGA
genomic: TGTTACTGCTCAAGATCTTACTGACATAATTAAGGCCCAGCTACAGAGgtactctttt ... tattttatagGGATGTGGACAAGCGAATTGTCTCTCTTCCAGAGATTCGGGAAACAGGGGA
EST: gi|351015950|gb|FQ431905.1|FQ431905
EST:     TGTTACTGCTCAAGATCTTACTGACATAATTAAGGCCCAGCTACAGAG                         GGATGTGGACAAGCGAATTGTCTCTCTTCCAGAGATTCGGGAAACAGGGGA
genomic: TGTTACTGCTCAAGATCTTACTGACATAATTAAGGCCCAGCTACAGAGgtactctttt ... tattttatagGGATGTGGACAAGCGAATTGTCTCTCTTCCAGAGATTCGGGAAACAGGGGA
EST: gi|351027101|gb|FQ439962.1|FQ439962
EST:     TGTTACTGCTCAAGATCTTACTGACATAATTAAGGCCCAGCTACAGAG                         GGATGTGGACAAGCGAATTGTCTCTCTTCCAGAGATTCGGGAAACAGGGGA
genomic: TGTTACTGCTCAAGATCTTACTGACATAATTAAGGCCCAGCTACAGAGgtactctttt ... tattttatagGGATGTGGACAAGCGAATTGTCTCTCTTCCAGAGATTCGGGAAACAGGGGA
EST: gi|349807735|gb|FQ402126.1|FQ402126
EST:     TGTTACTGCTCAAGATCTTACTGACATAATTAAGGCCCAGCTACAGAG                         GGATGTGGACAAGCGAATTGTCTCTCTTCCAGAGATTCGGGAAACAGGGGA
genomic: TGTTACTGCTCAAGATCTTACTGACATAATTAAGGCCCAGCTACAGAGgtactctttt ... tattttatagGGATGTGGACAAGCGAATTGTCTCTCTTCCAGAGATTCGGGAAACAGGGGA
EST: gi|349825957|gb|FQ415762.1|FQ415762
EST:     TGTTACTGCTCAAGATCTTACTGACATAATTAAGGCCCAGCTACAGAG                         GGATGTGGACAAGCGAATTGTCTCTCTTCCAGAGATTCGGGAAACAGGGGA
genomic: TGTTACTGCTCAAGATCTTACTGACATAATTAAGGCCCAGCTACAGAGgtactctttt ... tattttatagGGATGTGGACAAGCGAATTGTCTCTCTTCCAGAGATTCGGGAAACAGGGGA
EST: gi|349815335|gb|FQ400490.1|FQ400490
EST:     TGTTACTGCTCAAGATCTTACTGACATAATTAAGGCCCAGCTACAGAG                         GGATGTGGACAAGCGAATTGTCTCTCTTCCAGAGATTCGGGAAACAGGGGA
genomic: TGTTACTGCTCAAGATCTTACTGACATAATTAAGGCCCAGCTACAGAGgtactctttt ... tattttatagGGATGTGGACAAGCGAATTGTCTCTCTTCCAGAGATTCGGGAAACAGGGGA
EST: gi|351012803|gb|FQ430366.1|FQ430366
EST:     TGTTACTGCTCAAGATCTTACTGACATAATTAAGGCCCAGCTACAGAG                         GGATGTGGACAAGCGAATTGTCTCTCTTCCAGAGATTCGGGAAACAGGGGA
genomic: TGTTACTGCTCAAGATCTTACTGACATAATTAAGGCCCAGCTACAGAGgtactctttt ... tattttatagGGATGTGGACAAGCGAATTGTCTCTCTTCCAGAGATTCGGGAAACAGGGGA
EST: gi|349829711|gb|FQ421229.1|FQ421229
EST:     TGTTACTGCTCAAGATCTTACTGACATAATTAAGGCCCAGCTACAGAG                         GGATGTGGACAAGCGAATTGTCTCTCTTCCAGAGATTCGGGAAACAGGGGA
genomic: TGTTACTGCTCAAGATCTTACTGACATAATTAAGGCCCAGCTACAGAGgtactctttt ... tattttatagGGATGTGGACAAGCGAATTGTCTCTCTTCCAGAGATTCGGGAAACAGGGGA
EST: gi|110379944|gb|EC945171.1|EC945171
EST:     TGTTACTGCTCAAGATCTTACTGACATAATTAAGGCCCAGCTACAGAG                         GGATGTGGACAAGCGAATTGTCTCTCTTCCAGAGATTCGGGAAACAGGGGA
genomic: TGTTACTGCTCAAGATCTTACTGACATAATTAAGGCCCAGCTACAGAGgtactctttt ... tattttatagGGATGTGGACAAGCGAATTGTCTCTCTTCCAGAGATTCGGGAAACAGGGGA
EST: gi|349808261|gb|FQ403448.1|FQ403448
EST:     TGTTACTGCTCAAGATCTTACTGACATAATTAAGGCCCAGCTACAGAG                         GGATGTGGACAAGCGAATTGTCTCTCTTCCAGAGATTCGGGAAACAGGGGA
genomic: TGTTACTGCTCAAGATCTTACTGACATAATTAAGGCCCAGCTACAGAGgtactctttt ... tattttatagGGATGTGGACAAGCGAATTGTCTCTCTTCCAGAGATTCGGGAAACAGGGGA
EST: gi|351019772|gb|FQ439589.1|FQ439589
EST:     TGTTACTGCTCAAGATCTTACTGACATAATTAAGGCCCAGCTACAGAG                         GGATGTGGACAAGCGAATTGTCTCTCTTCCAGAGATTCGGGAAACAGGGGA
genomic: TGTTACTGCTCAAGATCTTACTGACATAATTAAGGCCCAGCTACAGAGgtactctttt ... tattttatagGGATGTGGACAAGCGAATTGTCTCTCTTCCAGAGATTCGGGAAACAGGGGA
EST: gi|26257781|gb|CA808844.1|CA808844
EST:     TGTTACTGCTCAAGATCTTACTGACATAATTAAGGCCCAGCTACAGAG                         GGATGTGGACAAGCGAATTGTCTCTCTTCCAGAGATTCGGGAAACAGGGGA
genomic: TGTTACTGCTCAAGATCTTACTGACATAATTAAGGCCCAGCTACAGAGgtactctttt ... tattttatagGGATGTGGACAAGCGAATTGTCTCTCTTCCAGAGATTCGGGAAACAGGGGA
EST: gi|110710470|gb|EE086833.1|EE086833
EST:     TGTTACTGCTCAAGATCTTACTGACATAATTAAGGCCCAGCTACAGAG                         GGATGTGGACAAGCGAATTGTCTCTCTTCCAGAGATTCGGGAAACAGGGGA
genomic: TGTTACTGCTCAAGATCTTACTGACATAATTAAGGCCCAGCTACAGAGgtactctttt ... tattttatagGGATGTGGACAAGCGAATTGTCTCTCTTCCAGAGATTCGGGAAACAGGGGA
EST: gi|349830872|gb|FQ418132.1|FQ418132
EST:     TGTTACTGCTCAAGATCTTACTGACATAATTAAGGCCCAGCTACAGAG                         GGATGTGGACAAGCGAATTGTCTCTCTTCCAGAGATTCGGGAAACAGGGGA
genomic: TGTTACTGCTCAAGATCTTACTGACATAATTAAGGCCCAGCTACAGAGgtactctttt ... tattttatagGGATGTGGACAAGCGAATTGTCTCTCTTCCAGAGATTCGGGAAACAGGGGA
EST: gi|110689228|gb|EE065270.1|EE065270
EST:     TGTTACTGCTCAAGATCTTACTGACATAATTAAGGCCCAGCTACAGAG                         GGATGTGGACAAGCGAATTGTCTCTCTTCCAGAGATTCGGGAAACAGGGGA
genomic: TGTTACTGCTCAAGATCTTACTGACATAATTAAGGCCCAGCTACAGAGgtactctttt ... tattttatagGGATGTGGACAAGCGAATTGTCTCTCTTCCAGAGATTCGGGAAACAGGGGA
EST: gi|351028155|gb|FQ426056.1|FQ426056
EST:     TGTTACTGCTCAAGATCTTACTGACATAATTAAGGCCCAGCTACAGAG                         GGATGTGGACAAGCGAATTGTCTCTCTTCCAGAGATTCGGGAAACAGGGGA
genomic: TGTTACTGCTCAAGATCTTACTGACATAATTAAGGCCCAGCTACAGAGgtactctttt ... tattttatagGGATGTGGACAAGCGAATTGTCTCTCTTCCAGAGATTCGGGAAACAGGGGA
EST: gi|351036245|gb|FQ464090.1|FQ464090
EST:     TGTTACTGCTCAAGATCTTACTGACATAATTAAGGCCCAGCTACAGAG                         GGATGTGGACAAGCGAATTGTCTCTCTTCCAGAGATTCGGGAAACAGGGGA
genomic: TGTTACTGCTCAAGATCTTACTGACATAATTAAGGCCCAGCTACAGAGgtactctttt ... tattttatagGGATGTGGACAAGCGAATTGTCTCTCTTCCAGAGATTCGGGAAACAGGGGA
EST: gi|22007363|gb|BQ792397.1|BQ792397
EST:     TGTTACTGCTCAAGATCTTACTGACATAATTAAGGCCCAGCTACAGAG                         GGATGTGGACAAGCGAATTGTCTCTCTTCCAGAGATTCGGGAAACAGGGGA
genomic: TGTTACTGCTCAAGATCTTACTGACATAATTAAGGCCCAGCTACAGAGgtactctttt ... tattttatagGGATGTGGACAAGCGAATTGTCTCTCTTCCAGAGATTCGGGAAACAGGGGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGTTACTGCTCAAGATCTTACTGACATAATTAAGGCCCAGCTACAGAGgtactcttttcctatatattcaggtttatgatgctgatatatgtcatttttacaagcattgaaacacactgaaaatttcaagcagtcccaaactatatgt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -attgaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaaatt