Sequence
atgc intronic sequence ATGC exonic sequenceTATGCTAGCAAAACCAACCAAGGGGGTATCTGAAATCATTGATAAATTCCAGGATATGGAATTCACCTGTGAATACAAATATGATGGAGAACGTGCTCAGgtaatagtacctagataaaccacttctgtttactgtttctccttgtgttatatgttccatgctatgactatgttcatccaagcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0061g00690.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA11G19880.1 (Glycine max), 5'ss of exon 5
TATGCTAGCAAAACCAACCAAGGGGGTATCTGAAATCATTGATAAATTCCAGGATATGGAATTCACCTGTGAATACAAATATGATGGAGAACGTGCTCAGgtaata-----gtacctagataaaccacttctgtttactgtttctccttgtgttatatgttccatg---------ctatgactatgttcatccaagcag-
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TATGCTGTCAAAGGCAACAAAGGGTGTATCTGAAATTCTAAATAAATTCCAGGATGTGGAGTTTACCTGTGAATACAAATATGATGGAGAGCGTGCCCAGgtgatacttcaacaacaacaacaacagcaacaatgccttatcccactaggtggggtcggctacatggatcaacttccgccataatgttctatcaagtacc
upper sequence: Vv06s0061g00690.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA12G08600.1 (Glycine max), 5'ss of exon 5
TATGCTAGCAAAACCAACCAAGGGGGTATCTGAAATCATTGATAAATTCCAGGATATGGAATTCACCTGTGAATACAAATATGATGGAGAACGTGCTCAGgtaatagtacctagataaaccacttctgtttactgtttctccttgtgttatatgttccatgctatgactatgttcatccaagcag
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TATGCTATCAAAGGCAACAAAGGGTGTATCTGAAATTCTAAATAAATTCCAGGATGTGGAGTTTACCTGTGAATACAAATATGACGGAGAGCGTGCCCAGgtgatactacatggtcaaatt--ttccatcagaaacatgatact-tattatgtgcaata-acattagctgtattgaaacag----
upper sequence: Vv06s0061g00690.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: AT1G08130.1 (Arabidopsis thaliana), 5'ss of exon 5
TATGCTAGCAAAACCAACCAAGGGGGTATCTGAAATCATTGATAAATTCCAGGATATGGAATTCACCTGTGAATACAAATATGATGGAGAACGTGCTCAGgtaatagtacctagataaaccacttctgtttactgtttctccttg-tgttatatgttc---catgctatgact-atgttcatccaa-----gcag
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CATGCTTGCAAAACCAACCAAAGGTGTAGCTGAGATACTGAATAAATTCCAGGACATCGTTTTCACATGTGAATACAAATATGATGGGGAACGTGCACAGgtgatatttggtgtctac-tgaattaggatgaatgctattcttagatatgagttatttaaatatggtatggcttatcatcaatcaatttctgcag
upper sequence: Vv06s0061g00690.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: AT1G49250.1 (Arabidopsis thaliana), 5'ss of exon 5
TATGCTAGCAAAACCAACCAAGGGGGTATCTGAAATCATTGATAAATTCCAGGATATGGAATTCACCTGTGAATACAAATATGATGGAGAACGTGCTCAGgtaata-gtacctagataaaccacttc--tgtttactgtttctccttgtgttatatgttccatgc-tatgactatgttcatccaagcag----------------
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CATGCTTGCAAAAGCAACTACAAGAGTAGATCTCATACTTGAGAAATTCAAGGACACTGTTTTCACAGCTGAATACAAATATGATGGTGAACGTGCACAGgtgatccattgctttctactcttatccgatgaatgctattattcgtaaagcaaagttatttatatgtgctgctacgtttggcttttcatcaatctattctcgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71857605|gb|DT006660.1|DT006660EST: AGGATATGGAATTCACCTGTGAATACAAATATGATGGAGAACGTGCTCAG ATACACTACAAGGAGGATGGGTCAGTTGAGATATATAGTCGCAATGCTGAA
genomic: AGGATATGGAATTCACCTGTGAATACAAATATGATGGAGAACGTGCTCAGgtaatagtac ... atccaagcagATACACTACAAGGAGGATGGGTCAGTTGAGATATATAGTCGCAATGCCGAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TATGCTAGCAAAACCAACCAAGGGGGTATCTGAAATCATTGATAAATTCCAGGATATGGAATTCACCTGTGAATACAAATATGATGGAGAACGTGCTCAGgtaatagtacctagataaaccacttctgtttactgtttctccttgtgttatatgttccatgctatgactatgttcatccaagcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA