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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGTGGTGGTTTTCATTCTCATCTTCCATTTTGCACCACAATGTGGAAGCACGAATGTCCTAGTTTTCACCGGCATTTGTTCATTGATGGGGTCTCTCTCGgtaaaaatgagatggaattactgtgatacttttgtttattatattatatttttctgacctagcattgcaaacttgatactttgagcctttctttgaacct...

Basic information

species Vitis vinifera
transcript Vv06s0009g03650.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0009g03650.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA14G03790.1 (Glycine max), 5'ss of exon 5
CGTGGTGGTTTTCATTCTCATCTTCCATTTTGCACCACAATGTGGAAGCACGAATGTCCTAGTTTTCACCGGCATTTGTTCATTGATGGGGTCTCTCTCGgtaaaaatgagatggaattactgtgata-cttttgtttattatattatattttt-ctgacctagcattgcaaacttgat--actttgagccttt--ctttgaacct
 ||  |||||||||||||  |||||||||||||||||  ||| ||    |||||||| |||||||| || |||||||||||||||||||| || ||||| ||||  |    ||  | | ||||| ||  ||  || | | | |  | | |  |   ||| ||    ||  ||  ||  |  |||   ||   ||  |||| ||   
AGTATTGGTTTTCATTCTGGTCTTCCATTTTGCACCAAGATGCGGGCATACGAATGTGCTAGTTTTTACTGGCATTTGTTCATTGATGGGTTCCCTCTCTgtaagta---aattaattaactgttatctctcctgctaagtcttctgtttgataattgatcttaacttcaaagtttagtttactcaaagttattaactttaaa---

upper sequence: Vv06s0009g03650.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA02G44980.2 (Glycine max), 5'ss of exon 4
CGTGGTGGTTTTCATTCTCATCTTCCATTTTGCACCACAATGTGGAAGCACGAATGTCCTAGTTTTCACCGGCATTTGTTCATTGATGGGGTCTCTCTCGgtaaaaatgagatggaattactgtgatacttttgtttattatattatatttttctgacctagcattgcaaacttga--tactttgagccttt--ctttgaacct
 ||| |||||||||||||  |||||||||||||||||  ||||||    |||||||| |||||||| || || ||||||||||||||||| || ||||| ||||  |    ||  | ||||||| || || |  |  | | | |  |   |   ||| |||   ||  ||  ||    ||||   ||   |    ||| || | 
AGTGTTGGTTTTCATTCTGGTCTTCCATTTTGCACCAAGATGTGGGCATACGAATGTGCTAGTTTTTACTGGAATTTGTTCATTGATGGGTTCCCTCTCTgtaagta---aattaatttactgttat-ctctcctgcaatgtctctttgatgattgatctaaacttcaaagttttgcttactcaaagttatcaagtttaaaaca
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161718932|gb|FC067009.1|FC067009
EST:     CGAATGTCCTAGTTTTCACCGGCATTTGTTCATTGATGGGGTCTCTCTCG                         GTGATGAATGTTAAAGCCCTGGGAACTTCACTGAAGTTGAC
genomic: CGAATGTCCTAGTTTTCACCGGCATTTGTTCATTGATGGGGTCTCTCTCGgtaaaaatga ... caatttgcagGTGATGAGTGTGAAAGCCCTGGGAACTTCACTGAAGTTGAC