1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GTGGTTAAAAATCTGATTCTTGCTGGAGCAAATGTAACTGCACTAAATAGgtgtgctgtctatgatcttatatgttgtttatttattttacttatatggaaattattggtatgaagacatgttttatttctcatataaatcattgcggcattggatgatattcag
species | Vitis vinifera |
transcript | Vv06s0009g03440.t01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GTGGTTAAAAATCTGATTCTTGCTGGAGCAAATGTAACTGCACTAAATAG CCATGAGAGGACTCCAATGGATGAAGCAGTAAGTAGGGGAAAGATGGATGTEST: gi|110702003|gb|EE080223.1|EE080223
genomic: GTGGTTAAAAATCTGATTCTTGCTGGAGCAAATGTAACTGCACTAAATAGgtgtgctgtc ... tgatattcagCCATGAGAGGACTCCAATGGATGAAGCAGTAAGTAGGGGAAAGATGGATGT
EST: GTGGTTAAAAATCTGATTCTTTTTGGAGCAAATGTAACTGCACTAAATAG CCATGAGAGGACTCCAATGGATGAAGCAGTAAGTAGGGGAAAGATGGATGTEST: gi|28959189|gb|CB339596.1|CB339596
genomic: GTGGTTAAAAATCTGATTCTTGCTGGAGCAAATGTAACTGCACTAAATAGgtgtgctgtc ... tgatattcagCCATGAGAGGACTCCAATGGATGAAGCAGTAAGTAGGGGAAAGATGGATGT
EST: GTGGTTAAAAATCTGATTCTTGCTGGAGCAAATGTAACTGCACTAAATAG CCATGAGAGGACTCCAATGGATGAAGCAGTAAGTAGGGGAAAGATGGATGTEST: gi|71889759|gb|DT038814.1|DT038814
genomic: GTGGTTAAAAATCTGATTCTTGCTGGAGCAAATGTAACTGCACTAAATAGgtgtgctgtc ... tgatattcagCCATGAGAGGACTCCAATGGATGAAGCAGTAAGTAGGGGAAAGATGGATGT
EST: GTGGTTAAAAATCTGATTCTTGCTGGAGCAAATGTAACTGCACTAAATAG CCATGAGAGGACTCCAATGGATGAAGCAGTAAGTAGGGGAAAGATGGATGTEST: gi|110398850|gb|EC965326.1|EC965326
genomic: GTGGTTAAAAATCTGATTCTTGCTGGAGCAAATGTAACTGCACTAAATAGgtgtgctgtc ... tgatattcagCCATGAGAGGACTCCAATGGATGAAGCAGTAAGTAGGGGAAAGATGGATGT
EST: GTGGTTAAAAATCTGATTCTTGCTGGAGCAAATGTAACTGCGCTAAATAG CCATGAGAGGACTCCAATGGATGAAGCAGTAAGTAGGGGAAAGATGGATGTEST: gi|110382025|gb|EC938279.1|EC938279
genomic: GTGGTTAAAAATCTGATTCTTGCTGGAGCAAATGTAACTGCACTAAATAGgtgtgctgtc ... tgatattcagCCATGAGAGGACTCCAATGGATGAAGCAGTAAGTAGGGGAAAGATGGATGT
EST: GTGGTTAAAAATCTGATTCTTGCTGGAGCAAATGTAACTGCACTAAATAG CCATGAGAGGACTCCAATGGATGAAGCAGTAAGTAGGGGAAAGATGGATGTEST: gi|110398949|gb|EC965433.1|EC965433
genomic: GTGGTTAAAAATCTGATTCTTGCTGGAGCAAATGTAACTGCACTAAATAGgtgtgctgtc ... tgatattcagCCATGAGAGGACTCCAATGGATGAAGCAGTAAGTAGGGGAAAGATGGATGT
EST: GTGGTTAAAAATCTGATTCTTGCTGGAGCAAATGTAACTGCACTAAATAG CCATGAGAGGACTCCAATGGATGAAGCAGTAAGTAGGGGAAAGATGGATGTEST: gi|28958619|gb|CB339304.1|CB339304
genomic: GTGGTTAAAAATCTGATTCTTGCTGGAGCAAATGTAACTGCACTAAATAGgtgtgctgtc ... tgatattcagCCATGAGAGGACTCCAATGGATGAAGCAGTAAGTAGGGGAAAGATGGATGT
EST: GTGGTTAAAAATCTGATTCTTGCTGGAGCAAATGTAACTGCACTAAATAG CCATGAGAGGACTCCAATGGATGAAGCAGTAAGTAGGGGAAAGATGGATGTEST: gi|71888016|gb|DT037071.1|DT037071
genomic: GTGGTTAAAAATCTGATTCTTGCTGGAGCAAATGTAACTGCACTAAATAGgtgtgctgtc ... tgatattcagCCATGAGAGGACTCCAATGGATGAAGCAGTAAGTAGGGGAAAGATGGATGT
EST: GTGGTTAAAAATCTGATTCTTGCTGGAGCAAATGTAACTGCACTAAATAG CCATGAGAGGACTCCAATGGATGAAGCAGTAAGTAGGGGAAAGATGGATGTEST: gi|28959022|gb|CB339512.1|CB339512
genomic: GTGGTTAAAAATCTGATTCTTGCTGGAGCAAATGTAACTGCACTAAATAGgtgtgctgtc ... tgatattcagCCATGAGAGGACTCCAATGGATGAAGCAGTAAGTAGGGGAAAGATGGATGT
EST: GTGGTTAAAAATCTGATTCTTGCTGGAGCAAATGTAACTGCACTAAATAG CCATGAGAGGACTCCAATGGATGAAGCAGTAAGTAGGGGAAAGATGGATGT
genomic: GTGGTTAAAAATCTGATTCTTGCTGGAGCAAATGTAACTGCACTAAATAGgtgtgctgtc ... tgatattcagCCATGAGAGGACTCCAATGGATGAAGCAGTAAGTAGGGGAAAGATGGATGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGGTTAAAAATCTGATTCTTGCTGGAGCAAATGTAACTGCACTAAATAGgtgtgctgtctatgatcttatatgttgtttatttattttacttatatggaaattattggtatgaagacatgttttatttctcatataaatcattgcggcattggatgatattcag
- - - - - - - - - - GCTGGA
- - - - - - - - - - - - GGAGCA