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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATGCATATGCTGTAGCATCTGCATTGCATGGTGTGCAGCATATCCTTCGTAAAGACTTCATGCTACAGgtttgcatgtgtcctgatgactcaatctgcatatcaccatttcttcttaatgtttatagaatatcacatggatcactaacatgcatcttgtaagttttcag

Basic information

species Vitis vinifera
transcript Vv06s0009g03360.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0009g03360.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G035595_T04 (Zea mays), 5'ss of exon 2
GTATGCATATGCTGTAGCATCTGCATTGCATGGTGTGCAGCATATCCTTCGTAAAGACTTCATGCTACAGgt-ttgcatgtgtcctgatgactcaatctgcatatcaccatttcttct--taatgtttata-gaatatcacatggatcactaacatgcatcttgtaagttttcag
||||||||| ||||| ||    ||||||||||| || || ||||||||||||||||| |||||| | |||||  |  || |||  || |   | |   ||    |   | || ||||   |||||| | |  || |  ||    | | |  ||||   |                
GTATGCATACGCTGTTGCTAGCGCATTGCATGGAGTTCATCATATCCTTCGTAAAGATTTCATGATCCAGgtgctctatttgtt-tgcttttttatcttggtagtattccttacttcaaataatgtgtgtttgactgacatgatggtaaaaaacaaatacag-------------

upper sequence: Vv06s0009g03360.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G035595_T02 (Zea mays), 5'ss of exon 5
-----------------GTATGCATATGCTGTAGCATCTGCATTGCATGGTGTGCAGCATATCCTTCGTAAAGACTTCATGCTACAGgt-ttgcatgtgtcctgatgactcaatctgcatatcaccatttcttc--ttaatgtttata-gaatatcacatggatcactaacatgcatcttgtaagttttcag
                 ||||||||| ||||| ||    ||||||||||| || || ||||||||||||||||| |||||| | |||||  |  || |||  || |   | |   ||    |   | || ||||   |||||| | |  || |  ||    | | |  ||||   |                
CCTTCTTTGACCTTTAGGTATGCATACGCTGTTGCTAGCGCATTGCATGGAGTTCATCATATCCTTCGTAAAGATTTCATGATCCAGgtgctctatttgtt-tgcttttttatcttggtagtattccttacttcaaataatgtgtgtttgactgacatgatggtaaaaaacaaatacag-------------

upper sequence: Vv06s0009g03360.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA02G44810.1 (Glycine max), 5'ss of exon 7
GTATGCATATGCTGTAGCATCTGCATTGCATGGTGTGCAGCATATCCTTCGTAAAGACTTCATGCTACAGgtttgcatgtgtcctgatgactcaatctgcatatcaccatttcttcttaatgtttatagaatatcacatggatcactaacatgcatc-ttgtaagttttcag
|||||| |||||||| ||||||||||||||||||||  ||||||  ||||| |||||||| ||||| |||||||| ||   | ||  ||  |   | || ||       ||  | ||||| |  | ||       |||    ||| | ||||||||| ||| ||  ||||||
GTATGCTTATGCTGTGGCATCTGCATTGCATGGTGTAAAGCATAATCTTCGCAAAGACTTTATGCTTCAGgtttgaat---tgcttgtg--ttgttttgtat-------ttgttacttaaggaattta------tacactagtcaatgacatgcatcattggaatgtttcag

upper sequence: Vv06s0009g03360.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA14G03930.1 (Glycine max), 5'ss of exon 5
GTATGCATATGCTGTAGCATCTGCATTGCATGGTGTGCAGCATATCCTTCGTAAAGACTTCATGCTACAGgtttgcatgtgtcctgatgactcaatctgcatatcaccatttcttcttaatgtttatagaatatcacatggatcactaacatgcatc-ttgtaagttttcag
|||||| ||||||||  |||||||||||||||||||  ||||||  ||||| |||||||| ||||| |||||||| || || |    ||  |   | || |       ||| || ||||| |  |  |       |||    ||  | ||||||||| ||| ||  ||||||
GTATGCTTATGCTGTGACATCTGCATTGCATGGTGTAGAGCATAATCTTCGAAAAGACTTTATGCTTCAGgtttgaat-tgcc----tgtgttgttttgta-------attgctacttaaggaattca------tacacaagtccgtgacatgcatcattggaatgtttcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110364715|gb|EC928173.1|EC928173
EST:     CTGCATTGCATGGTGTGCAGCATATCCTTCGTAAAGACTTCATGCTACAG                         CCTCCATGGGATTTGGAAGTTGGGAAGAAGTTTATTATCCATTATACATAT
genomic: CTGCATTGCATGGTGTGCAGCATATCCTTCGTAAAGACTTCATGCTACAGgtttgcatgt ... aagttttcagCCTCCATGGGATTTGGAAGTTGGGAAGAAGTTTATTATCCATTATACATAT
EST: gi|110422611|gb|EC988938.1|EC988938
EST:     CTGCATTGCATGGTGTGCAGCATATCCTTCGTAAAGACTTCATGCTACAG                         CCTCCATGGGATTTGGAAGTTGGGAAGAAGTTTATTATCCATTATACATAT
genomic: CTGCATTGCATGGTGTGCAGCATATCCTTCGTAAAGACTTCATGCTACAGgtttgcatgt ... aagttttcagCCTCCATGGGATTTGGAAGTTGGGAAGAAGTTTATTATCCATTATACATAT