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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACATGCTGAAAATGGAGATGCTGTATTTGAAGGGCAGAAAAGAATGATAGAACTTGGCATTACTGGTCCAGAGGGACATGCACTTTCAAGGCCACCCGTGgtaattccttaaagatgtccattttttctttgaccctgtattgccctctggtgttgcacttatagtattttacatcattaaacctatttttgaacttttg...

Basic information

species Vitis vinifera
transcript Vv06s0009g02790.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0009g02790.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA15G06100.1 (Glycine max), 5'ss of exon 5
ACATGCTGAAAATGGAGATGCTGTATTTGAAGGGCAGAAAAGAATGATAGAACTTGGCATTACTGGTCCAGAGGGACATGCACTTTCAAGGCCACCCGTGgtaattccttaaagatgtccattttttc---tttgaccctgtattgccctctg-gtgttgcacttatagtattttacatcattaaacctatttttgaacttttg
 ||||| ||||||||||||||||| |  ||||| ||| ||| ||||||||||||||| || |||||||| ||||||||||| |||||| ||||  | ||||||| | || | |  ||| | ||| |      || ||    || ||   |    ||  ||  |   |    ||||   |||| |     ||| |   ||     
CCATGCAGAAAATGGAGATGCTGTGTACGAAGGTCAGGAAAAAATGATAGAACTTGGAATAACTGGTCCTGAGGGACATGCTCTTTCACGGCCTGCAGTGgtaaattctcatatttgttcttttgtaaagaatttacagaataatggaatgaaagtactggccacttccagttttgtttcatcatcttcattatcttacc----

upper sequence: Vv06s0009g02790.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA14G04030.1 (Glycine max), 5'ss of exon 5
ACATGCTGAAAATGGAGATGCTGTATTTGAAGGGCAGAAAAGAATGATAGAACTTGGCATTACTGGTCCAGAGGGACATGCACTTTCAAGGCCACCCGTGgtaattccttaaagatgtccattttttctttgaccctgtattgccctctggtgttgcacttatagtattttacatcattaaacctatttttgaacttttg-
 ||||| ||||||||||||||||| | |||||||||    | ||||||||||||||| || |||||||| ||||| ||||| |||||||||||  | ||||||||| || ||   ||| | ||||      ||   || |      |    ||      ||  |   ||||   |       | | || ||     | || 
CCATGCAGAAAATGGAGATGCTGTGTATGAAGGGCAACGGAAAATGATAGAACTTGGAATAACTGGTCCTGAGGGGCATGCTCTTTCAAGGCCTGCAGTGgtaatttctcaatattgttc-ttttagtaaagaatttgcagaataatggaatgaaaatattggacatttttttgtttccttccatcttcttcgttgtctga

upper sequence: Vv06s0009g02790.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA02G44690.1 (Glycine max), 5'ss of exon 5
ACATGCTGAAAATGGAGATGCTGTATTTGAAGGGCAGAAAAGAATGATAGAACTTGGCATTACTGGTCCAGAGGGACATGCACTTTCAAGGCCACCCGTGgtaattccttaaagatgtccattttttctttgaccctgtattgccctctggtgttgcacttatagtattttacatcattaaacctattttt-gaacttttg------
 ||||| ||||||||||||||||| | |||||||||  | | ||||||||||||||| || |||||||| || || ||||| |||||||||||  | |||||||       ||  ||   | |       |||   ||  |   | | |  |||| |  || |  | || | |||  |   ||| |  | | | |  | ||      
CCATGCGGAAAATGGAGATGCTGTGTATGAAGGGCAACAGAAAATGATAGAACTTGGAATAACTGGTCCTGAAGGGCATGCTCTTTCAAGGCCTGCAGTGgtaaa-----gaatttgcagaataagggaatgaaaatgattgaacattttttgtttcttttct--tcttcttcattgtctgaccaacctatagcatatgtgaatgtg

upper sequence: Vv06s0009g02790.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: AT5G12200.1 (Arabidopsis thaliana), 5'ss of exon 5
ACATGCTGAAAATGGAGATGCTGTATTTGAAGGGCAGAAAAGAATGATAGAACTTGGCATTACTGGTCCAGAGGGACATGCACTTTCAAGGCCACCCGTGgtaatt--ccttaaagatgtccattttttctttgaccctgtattgccctctggtgttgcact-tatagtattttacatcattaaacctatttttgaacttttg----------------------------
 |||||||||||||||||||| ||||| ||||| |||||||||||||| ||||| |||||||| ||||||||||| ||||| ||||||||||| || |||||||||  | | ||  || | |  ||||  | |    |    | |   | |  | ||   || |||    | || | ||  |||| || | ||  | ||  |                             
TCATGCTGAAAATGGAGATGCAGTATTCGAAGGACAGAAAAGAATGATTGAACTGGGCATTACAGGTCCAGAGGGTCATGCTCTTTCAAGGCCTCCTGTGgtaatttgcgtcaagcattttccattttattatactgcctcctagattttttcttttctcctatatctgctcttgcctctgtaaagctttgttgaagctactaaaacaagatccttgtttgacaatgtcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|294965274|gb|GW838961.1|GW838961
EST:     GGGACATGCACTTTCAAGGCCACCCGTG                         CTAGAAGGAGAGGCAACTGCTAGAGCTATTCGGTTGGCCAGTTTTGTTAAC
genomic: GGGACATGCACTTTCAAGGCCACCCGTGgtaattcctt ... ccttatgcagCTAGAAGGAGAGGCAACTGCTAGAGCTATTCGGTTGGCCAGTTTTGTTAAC
EST: gi|30295952|gb|CB972746.1|CB972746
EST:     AACTTGGCATTACTGGTCCAGAGGGACATGCACTTTCAAGGCCACCCGTG                         CTAGAAGGAGAGGCAACTGCTAGAGCTATTCGGTTGGCCAGTTTTGTTAAC
genomic: AACTTGGCATTACTGGTCCAGAGGGACATGCACTTTCAAGGCCACCCGTGgtaattcctt ... ccttatgcagCTAGAAGGAGAGGCAACTGCTAGAGCTATTCGGTTGGCCAGTTTTGTTAAC