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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGATGTTTCAAGCAACAACTTATGTGGAACAATTCCAACAACCGGACCGTTTGAGCACATTCCATTGAACAAgtatgccttaatttatctttcttctactttatgaattatatggcttctgataactcttgaactagctatgaacatggatagtataatccatgggttttca...

Basic information

species Vitis vinifera
transcript Vv06s0009g01210.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0009g01210.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: LOC_Os01g59440.1 (Oryza sativa), 5'ss of exon 5
TGATGTTTCAAGCAACAACTTATGTGGAACAATTCCAACAACCGGACCGTTTGAGCACATTCCATTGAACAAgtatgccttaatttatctttcttctact-ttatgaattatatggcttctgataactcttgaactagctatgaacatggatagtataatccatgggttttca----
|||||||||||||||  |  | |||||||||||||| ||| | ||||| ||||||||||||||  | | |||||| |  | |   |  |||| |  |||| |||||| || |   ||       || || | | |    |||     |  ||   | ||   ||||     ||    
TGATGTTTCAAGCAATGATCTGTGTGGAACAATTCCTACATCAGGACCATTTGAGCACATTCCCCTAAGCAAgtaagtttga--ctgcctttgtgatactattatgatttcttcagcagtattaaagtcattatcattttatat---taaatttcaaaactaatggtagcccaaaac

upper sequence: Vv06s0009g01210.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM5G815009_T02 (Zea mays), 5'ss of exon 5
TGATGTTTCAAGCAACAACTTATGTGGAACAATTCCAACAACCGGACCGTTTGAGCACATTCCATTGAACAAgtatgc------cttaattt--atctttcttc-tactttatgaat-tatatggcttctgataactcttgaactagctatg---aacatggatagtataatccatgggttttca
 ||||||||||||||  | |||||||| || ||||| ||| | ||||| ||||||||||||||  ||| |||||| |       | || |||  |||||  | | |||||||| ||  || ||  |  || | |||  ||   ||  || ||    ||| |   ||||   |             
CGATGTTTCAAGCAATGATTTATGTGGGACGATTCCCACATCTGGACCATTTGAGCACATTCCTCTGAGCAAgtaagttacattcctactttgcatcttcttgcatactttataaagataaattacacctcaaaacatttagtcttcctctgccagacaagtgcagtaagtt-------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110726152|gb|EE101683.1|EE101683
EST:     TGTGGAACAATTCCAACAACCGGACCGTTTGAGCACATTCCATTGAACAA                         CTTTGAGAATAATCCTAGACTGGAAGGTCCAGAGTTGCAGGGACTTGCGAG
genomic: TGTGGAACAATTCCAACAACCGGACCGTTTGAGCACATTCCATTGAACAAgtatgcctta ... aatggtgtagCTTTGAGAATAATCCTAGACTGGAAGGTCCAGAGTTGCAGGGACTTGCGAG
EST: gi|352790557|gb|FQ478196.1|FQ478196
EST:     TGTGGAACAATTCCAACAACCGGACCGTTTGAGCACATTCCATTGAACAA                         CTTTGAGAATAATCCTAGACTGGAAGGTCCAGAGTTGCAGGGACTTGCGAG
genomic: TGTGGAACAATTCCAACAACCGGACCGTTTGAGCACATTCCATTGAACAAgtatgcctta ... aatggtgtagCTTTGAGAATAATCCTAGACTGGAAGGTCCAGAGTTGCAGGGACTTGCGAG