Sequence
atgc intronic sequence ATGC exonic sequenceGGCAGAATTGATGAAAAAATCGAATGGCGCCTACTTTCCTGAGGAGgtatgtgcttccatattgggaaatttgattctccaaaaatacatatcacgaactatatggcaggggtagttttgataataactggagatatttagtcatc...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0009g00690.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G137118_T02 (Zea mays), 5'ss of exon 6
GGCAGAATTGATGAAAAAATCGAATGGCGCCTACTTTCCTGAGGAGgtatgtgcttccatattgggaaatttgattctccaaaaatacatatcacgaactatatggcaggggtagttttgataataactggagatatttagtcatc
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GGATGAGCTGATGAAGAAATCAAATGGTACCTACTTTCCTGAGGAGgtatgagaagac---ttgtgcattttgtttatctgg-------ttgaaggaaggaaatcatccacattgcacttataacaccgaataatcttcag-----
upper sequence: Vv06s0009g00690.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA12G09910.1 (Glycine max), 5'ss of exon 5
GGCAGAATTGATGAAAAAATCGAATGGCGCCTACTTTCCTGAGGAGgtatgtgcttcc----atattgggaaatttgattctccaaaaatacatatcacgaactatatggcaggggtagttttgataataactggagatatttagtcatc----
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GGCTGAATTGATGAAAAAATTAAATGGTGCTTACTTTCCTGAGGAGgtatgtttttctcagggttgtgtgtgtattcttttcccacatggccacatcttgagttaatttttgaaaaattttgtgacttacattgatattgttgaaattgctcag
upper sequence: Vv06s0009g00690.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA11G18340.1 (Glycine max), 5'ss of exon 5
GGCAGAATTGATGAAAAAATCGAATGGCGCCTACTTTCCTGAGGAGgtatgt---------gcttccatat-------tgggaaatttgattctccaaaaatacatatcacgaacta-tatggcaggggtagttttgataataactggagatatttagtcatc----
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GGCTGAATTGATGAAAAAATTAAACGGTGCTTACTTTCCTGAGGAGgtatgtttgtctcacggttgcatgtgtgtttatgtgtgtattcttttcccacatggtcaaatcttgagttaatgttaaaattttttttttgacttgcattgatgttgttgaaattgctcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71862067|gb|DT011122.1|DT011122EST: GGCAGAATTGATGAAAAAATCGAATGGCGCCTACTTTCCTGAGGAG AAACTTTGCAAATGGTTTGCGCAATTATTATTGGCTGTCGAATATCTGCAT
genomic: GGCAGAATTGATGAAAAAATCGAATGGCGCCTACTTTCCTGAGGAGgtatgtgctt ... ccactttcagAAACTTTGCAAATGGTTTGCGCAATTATTATTGGCTGTCGAATATCTGCAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGCAGAATTGATGAAAAAATCGAATGGCGCCTACTTTCCTGAGGAGgtatgtgcttccatattgggaaatttgattctccaaaaatacatatcacgaactatatggcaggggtagttttgataataactggagatatttagtcatc
- - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gggaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggggtag