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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTGCACTGCTAAGATGAACTTAAGCGATGAGGTTGACTTGGAGGACTATGTTTCTCGGCCAGATAAAATTAGTGCTGCTGAGgttagcttattctgtatcttatctttacagttttcttgttgtctgagtcctcaatttcaaatgtagtactagaacttatgttcactgggggaaattttgt...

Basic information

species Vitis vinifera
transcript Vv06s0004g08220.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0004g08220.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: LOC_Os02g21970.1 (Oryza sativa), 5'ss of exon 5
GTTTGCACTGCTAAGATGAACTTAAGCGATGAGGTTGACTTGGAGGACTATGTTTCTCGGCCAGATAAAATTAGTGCTGCTGAGgttagc-ttattctgtatcttatctttacagttttcttgttgtctgagtcctcaatttcaaa-tgtagtactagaacttatgttcactgggggaaattttgt
|| || |||||||| |||||||| || ||||||||||| ||||| || ||||||||  | ||||||||||||||||||||||| || ||  | ||||  | | | ||||| | | |     | |  |   |       || ||||  || | |  ||  |||   |   |    | | | |   | 
GTCTGTACTGCTAAAATGAACTTGAGTGATGAGGTTGATTTGGAAGATTATGTTTCCAGACCAGATAAAATTAGTGCTGCTGATgtgagtatcattccat-tttgatcttcatattacatctatcataacataataatatatcaatctgcatttgtaccactagagcataactagaggattgccg-

upper sequence: Vv06s0004g08220.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G090904_T01 (Zea mays), 5'ss of exon 5
GTTTGCACTGCTAAGATGAACTTAAGCGATGAGGTTGACTTGGAGGACTATGTTTCTCGGCCAGATAAAATTAGTGCTGCTGAGgttagcttattctgtatcttatctttacagttttcttgttgtctgagtcctcaatttcaaatgtagtactagaac-ttatgttcactgggggaaattttgt---
||||||||||| || |||||| | |||||||||||||| ||||| || ||||||||  | || ||||| || ||||||||||| || ||  | || |  ||  || | ||  |  ||  |  |      |  | | || ||||  |   | | || ||  ||  ||   |||  |  | ||  |    
GTTTGCACTGCCAAAATGAACCTGAGCGATGAGGTTGATTTGGAAGATTATGTTTCCAGACCGGATAAGATCAGTGCTGCTGATgtgagtctctttt-cattctaacgttttaaattaataatacaaatacacttgaaattcatctactggaatacaatgttgcgt---ctgatgccacttccgccca

upper sequence: Vv06s0004g08220.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA11G31450.1 (Glycine max), 5'ss of exon 5
GTTTGCACTGCTAAGATGAACTTAAGCGATGAGGTTGACTTGGAGGACTATGTTTCTCGGCCAGATAAAATTAGTGCTGCTGAGgttagcttattctgtatcttatctttacagttttcttgtt-----gtctgagtcctcaatttcaaatgtagtactagaacttatgttcactgggggaaattttgt
|||||||| || ||||||||||| || |||||||| ||| ||||||| ||||||||||| || || ||||| ||||||||||||||| | ||||| | |||||| || | |   ||||  ||       || |   |    |||   ||   | ||  |     | | | ||| |     || | ||  
GTTTGCACAGCCAAGATGAACTTGAGTGATGAGGTAGACCTGGAGGATTATGTTTCTCGTCCCGACAAAATCAGTGCTGCTGAGgtttg-ttatt-tatatcttgtcct-atgatttttgtgccaataagtttatataggaaataggaatgcttgttattagtttcaagatcatttatataactatt--

upper sequence: Vv06s0004g08220.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA11G31470.1 (Glycine max), 5'ss of exon 5
GTTTGCACTGCTAAGATGAACTTAAGCGATGAGGTTGACTTGGAGGACTATGTTTCTCGGCCAGATAAAATTAGTGCTGCTGAGgttagcttattctgtatcttatctttacagttttc------ttgttgtctgagtcctcaatttcaaatgtagtactagaacttatgttcactgggggaaattttgt
|||||||| || ||||||||||| || |||||||| ||  ||||||| ||||||||||| || || ||||| ||||||||||||||| | || ||   | || |||   |   ||   |      ||  |||  || | ||   | | |  |  || |  |    ||||  | |||   |||| ||||  
GTTTGCACAGCCAAGATGAACTTGAGTGATGAGGTAGATCTGGAGGATTATGTTTCTCGCCCTGACAAAATCAGTGCTGCTGAGgtttgtttctttcttgtcctatgacttttgtgcccaataattttatgtaggaatgcttgttattagtttcaggatca---tttat-ctaactattggaagtttt--

upper sequence: Vv06s0004g08220.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA18G05730.1 (Glycine max), 5'ss of exon 5
-GTTTGCACTGCTAAGATGAACTTAAGCGATGAGGTTGACTTGGAGGACTATGTTTCTCGGCCAGATAAAATTAGTGCTGCTGAGgttagcttattctgtatcttatctttacagttttcttgttgtctgagtcctcaatttcaaatgtagtactagaacttatgttcactgggggaaattttgt----
 |||||||| || || |||||||| || |||||||| ||| | ||||| ||||||||||| || || ||||| ||||||||||||||| | ||||    |||  |||    | | | | | | |  | |  ||    |   | |  |||   |  |  | || |  | |||   |||| ||||      
GGTTTGCACAGCCAAAATGAACTTGAGTGATGAGGTAGACCTAGAGGATTATGTTTCTCGTCCTGACAAAATCAGTGCTGCTGAGgtttgtttatatcttattctatg---atattgtgcctataatttatgtagggatgcttatttgtttcatgatcatttgt-ctaactataggaattttttgaagt

upper sequence: Vv06s0004g08220.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: AT5G58290.1 (Arabidopsis thaliana), 5'ss of exon 5
GTTTGCACTGCTAAGATGAACTTAAGCGATGAGGTTGACTTGGAGGACTATGTTTCTCGGCCAGATAAAATTAGTGCTGCTGAGgttagcttattctgtatcttatctttacagttttcttgttgtc-tgagtcctcaatttcaaatgtagtactagaacttatgttcactggggga-aattttgt-
|| |||||  | || |||||| | |||||||||||||||||||| ||||||||||| ||||| ||||||||||| |||||||||||||| ||||| ||   |||| | ||  | | |||  | | |  |      | |   | | || |  | |      |   | ||||      |  || || | 
GTATGCACCTCCAAAATGAACCTTAGCGATGAGGTTGACTTGGAAGACTATGTTTCACGGCCTGATAAAATTAGCGCTGCTGAGgttagtttattttg---cttaccattctattcttcccgctatagtttacttttaccatgatatatcctccagtgtttctgggtcaccacctaatgatgttctt

upper sequence: Vv06s0004g08220.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: PP1S147_100V6.1 (Physcomitrella patens), 5'ss of exon 5
GTTTGCACTGCTAAGATGAACTTAAGCGATGAGGTTGACTTGGAGGACTATGTTTCTCGGCCAGATAAAATTAGTGCTGCTGAGgttagcttattctgtatcttatctttacagttttcttgttgtctgagtcctcaatttcaaatgtagtactagaacttatgttcactgggggaaattttgt---
|| || ||||| ||||||||  ||||||| |||||||| || || |||||||||||| |||| |||||||| ||||||||||||||  | |  |||      | ||   | ||  |||   ||  |||   |    ||||| | | ||| |     |   | | | ||    |   |   ||||   
GTATGTACTGCAAAGATGAATCTAAGCGAGGAGGTTGATTTAGAAGACTATGTTTCTAGGCCTGATAAAATAAGTGCTGCTGAGgtgcgttctttcacagcgtcattcctgcacattttaagtgatct---tttaaaatttgataagtactggcgaacactgtttccagattgcagatgcttgtgat

upper sequence: Vv06s0004g08220.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: EFJ04233 (Selaginella moellendorffii), 5'ss of exon 5
GTTTGCACTGCTAAGATGAACTTAAGCGATGAGGTTGACTTGGAGGACTATGTTTCTCGGCCAGATAAAATTAGTGCTGCTGAGgtta------gcttattctgtatcttatctttacagttttcttgttgtctgagtcctcaatttcaaatgtagtactagaacttatgttcactgggggaaattttgt
|||||||| || ||||||||  | |||||||| || ||  | |||||||||||||||||||| |||||||| || || || |||||        | || |  ||    |||   | ||   |||| | || ||                                                         
GTTTGCACGGCAAAGATGAATCTGAGCGATGAAGTGGATCTCGAGGACTATGTTTCTCGGCCTGATAAAATAAGCGCCGCCGAGgtagagagccgtttgtcttgggctttactctgacgcatttcct-ttatccag------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|352764633|gb|FQ469708.1|FQ469708
EST:     TTGACTTGGAGGACTATGTTTCTCGGCCAGATAAAATTAGTGCTGCTGAG                         ATTGCTGCTATTTGTCAAGAAGCTGGGATGCATGCTGTTCGCAAGAACCGA
genomic: TTGACTTGGAGGACTATGTTTCTCGGCCAGATAAAATTAGTGCTGCTGAGgttagcttat ... acgtatgcagATTGCTGCTATTTGTCAAGAAGCTGGGATGCATGCTGTTCGCAAGAACCGA
EST: gi|110408764|gb|EC974405.1|EC974405
EST:     TTGACTTGGAGGACTATGTTTCTCGGCCAGATAAAATTAGTGCTGCTGAG                         ATTGCTGCTATTTGTCAAGAAGCTGGGATGCATGCTGTTCGCAAGAACCGA
genomic: TTGACTTGGAGGACTATGTTTCTCGGCCAGATAAAATTAGTGCTGCTGAGgttagcttat ... acgtatgcagATTGCTGCTATTTGTCAAGAAGCTGGGATGCATGCTGTTCGCAAGAACCGA
EST: gi|37184209|gb|CF603563.1|CF603563
EST:     TTGACTTGGAGGACTATGTTTCTCGGCCAGATAAAATTAGTGCTGCTGAG                         ATTGCTGCTATTTGTCAAGAAGCTGGGATGCATGCTGTTCGCAAGAACCGA
genomic: TTGACTTGGAGGACTATGTTTCTCGGCCAGATAAAATTAGTGCTGCTGAGgttagcttat ... acgtatgcagATTGCTGCTATTTGTCAAGAAGCTGGGATGCATGCTGTTCGCAAGAACCGA
EST: gi|30298944|gb|CB975738.1|CB975738
EST:     TTGACTTGGAGGACTATGTTTTTCGGCCAGATAAAATTAGTGCTGCTGAG                         ATTGCTGTTATTTGTCAAGAAGCTGGGATGCATGCTGTTCGCAAGAACCGA
genomic: TTGACTTGGAGGACTATGTTTCTCGGCCAGATAAAATTAGTGCTGCTGAGgttagcttat ... acgtatgcagATTGCTGCTATTTGTCAAGAAGCTGGGATGCATGCTGTTCGCAAGAACCGA
EST: gi|33405877|gb|CF211504.1|CF211504
EST:     TTGACTTGGAGGACTATGTTTCTCGGCCAGATAAAATTAGTGCTGCTGAG                         ATTGCTGCTATTTGTCAAGAAGCTGGGATGCATGCTGTTCGCAAGAACCGA
genomic: TTGACTTGGAGGACTATGTTTCTCGGCCAGATAAAATTAGTGCTGCTGAGgttagcttat ... acgtatgcagATTGCTGCTATTTGTCAAGAAGCTGGGATGCATGCTGTTCGCAAGAACCGA
EST: gi|27583947|gb|CB006642.1|CB006642
EST:     TTGACTTGGAGGACTATGTTTCTCGGCCAGATAAAATTAGTGCTGCTGAG                         ATTGCTGCTATTTGTCAAGAAGCTGGGATGCATGCTGTTCGCAAGAACCGA
genomic: TTGACTTGGAGGACTATGTTTCTCGGCCAGATAAAATTAGTGCTGCTGAGgttagcttat ... acgtatgcagATTGCTGCTATTTGTCAAGAAGCTGGGATGCATGCTGTTCGCAAGAACCGA
EST: gi|30330039|gb|CD013301.1|CD013301
EST:     TTGACTTGGAGGACTATGTTTCTCGGCCAGATAAAATTAGTGCTGCTGAG                         ATTGCTGCTATTTGTCAAGAAGCTGGGATGCATGCTGTTCGCAAGAACCGA
genomic: TTGACTTGGAGGACTATGTTTCTCGGCCAGATAAAATTAGTGCTGCTGAGgttagcttat ... acgtatgcagATTGCTGCTATTTGTCAAGAAGCTGGGATGCATGCTGTTCGCAAGAACCGA
EST: gi|30137656|gb|CB922994.1|CB922994
EST:     TTGACTTGGAGGACTATGTTTCTCGGCCAGATAAAATTAGTGCTGCTGAG                         ATTGCTGCTATTTGTCAAGAAGCTGGGATGCATGCTGTTCGCAAGAACCGA
genomic: TTGACTTGGAGGACTATGTTTCTCGGCCAGATAAAATTAGTGCTGCTGAGgttagcttat ... acgtatgcagATTGCTGCTATTTGTCAAGAAGCTGGGATGCATGCTGTTCGCAAGAACCGA
EST: gi|71888901|gb|DT037956.1|DT037956
EST:     TTGACTTGGAGGACTATGTTTCTCGGCCAGATAAAATTAGTGCTGCTGAG                         ATTGCTGCTATTTGTCAAGAAGCTGGGATGCATGCTGTTCGCAAGAACCGA
genomic: TTGACTTGGAGGACTATGTTTCTCGGCCAGATAAAATTAGTGCTGCTGAGgttagcttat ... acgtatgcagATTGCTGCTATTTGTCAAGAAGCTGGGATGCATGCTGTTCGCAAGAACCGA
EST: gi|110361748|gb|EC925244.1|EC925244
EST:     TTGACTTGGAGGACTATGTTTCTCGGCCAGATAAAATTAGTGCTGCTGAG                         ATTGCTGCTATTTGTCAAGAAGCTGGGATGCATGCTGTTCGCAAGAACCGA
genomic: TTGACTTGGAGGACTATGTTTCTCGGCCAGATAAAATTAGTGCTGCTGAGgttagcttat ... acgtatgcagATTGCTGCTATTTGTCAAGAAGCTGGGATGCATGCTGTTCGCAAGAACCGA
EST: gi|30329505|gb|CD012767.1|CD012767
EST:     TTGACTTGGAGGACTATGTTTCTCGGCCAGATAAAATTAGTGCTGCTGAG                         ATTGCTGCTATTTGTCAAGAAGCTGGGATGCATGCTGTTCGCAAGAACCGA
genomic: TTGACTTGGAGGACTATGTTTCTCGGCCAGATAAAATTAGTGCTGCTGAGgttagcttat ... acgtatgcagATTGCTGCTATTTGTCAAGAAGCTGGGATGCATGCTGTTCGCAAGAACCGA
EST: gi|110374067|gb|EC938575.1|EC938575
EST:     TTGACTTGGAGGACTATGTTTTTCGGCCAGATAAAATTAGTGCTGCTGAG                         ATTGCTGCTATTTGTCAAGAAGCTGGGATGCATGCTGTTCGCAAGAACCGA
genomic: TTGACTTGGAGGACTATGTTTCTCGGCCAGATAAAATTAGTGCTGCTGAGgttagcttat ... acgtatgcagATTGCTGCTATTTGTCAAGAAGCTGGGATGCATGCTGTTCGCAAGAACCGA
EST: gi|110696113|gb|EE074898.1|EE074898
EST:     TTGACTTGGAGGACTATGTTTCTCGGCCAGATAAAATTAGTGCTGCTGAG                         ATTGCTGCTATTTGTCAAGAAGCTGGGATGCATGCTGTTCGCAAGAACCGA
genomic: TTGACTTGGAGGACTATGTTTCTCGGCCAGATAAAATTAGTGCTGCTGAGgttagcttat ... acgtatgcagATTGCTGCTATTTGTCAAGAAGCTGGGATGCATGCTGTTCGCAAGAACCGA
EST: gi|71870890|gb|DT019945.1|DT019945
EST:     TTGACTTGGAGGACTATGTTTCTCGGCCAGATAAAATTAGTGCTGCTGAG                         ATTGCTGCTATTTGTCAAGAAGCTGGGATGCATGCTGTTCGCAAGAACCGA
genomic: TTGACTTGGAGGACTATGTTTCTCGGCCAGATAAAATTAGTGCTGCTGAGgttagcttat ... acgtatgcagATTGCTGCTATTTGTCAAGAAGCTGGGATGCATGCTGTTCGCAAGAACCGA
EST: gi|46918879|gb|CN548208.1|CN548208
EST:     TTGACTTGGAGGACTATGTTTCTCGGCCAGATAAAATTAGTGCTGCTGAG                         ATTGCTGCTATTTGTCAAGAAGCTGGGATGCATGCTGTTCGCAAGAACCGA
genomic: TTGACTTGGAGGACTATGTTTCTCGGCCAGATAAAATTAGTGCTGCTGAGgttagcttat ... acgtatgcagATTGCTGCTATTTGTCAAGAAGCTGGGATGCATGCTGTTCGCAAGAACCGA
EST: gi|110370231|gb|EC929168.1|EC929168
EST:     TTGACTTGGAGGACTATGTTTCTCGGCCAGATAAAATTAGTGCTGCTGAG                         ATTGCTGCTATTTGTCAAGAAGCTGGGATGCATGCTGTTCGCAAGAACCGA
genomic: TTGACTTGGAGGACTATGTTTCTCGGCCAGATAAAATTAGTGCTGCTGAGgttagcttat ... acgtatgcagATTGCTGCTATTTGTCAAGAAGCTGGGATGCATGCTGTTCGCAAGAACCGA
EST: gi|110386625|gb|EC951239.1|EC951239
EST:     TTGACTTGGAGGACTATGTTTCTCGGCCAGATAAAATTAGTGCTGCTGAG                         ATTGCTGCTATTTGTCAAGAAGCTGGGATGCATGCTGTTCGCAAGAACCGA
genomic: TTGACTTGGAGGACTATGTTTCTCGGCCAGATAAAATTAGTGCTGCTGAGgttagcttat ... acgtatgcagATTGCTGCTATTTGTCAAGAAGCTGGGATGCATGCTGTTCGCAAGAACCGA
EST: gi|110406828|gb|EC972414.1|EC972414
EST:     TTGACTTGGAGGACTATGTTTCTCGGCCAGATAAAATTAGTGCTGCTGAG                         ATTGCTGCTATTTGTCAAGAAGCTGGGATGCATGCTGTTCGCAAGAACCGA
genomic: TTGACTTGGAGGACTATGTTTCTCGGCCAGATAAAATTAGTGCTGCTGAGgttagcttat ... acgtatgcagATTGCTGCTATTTGTCAAGAAGCTGGGATGCATGCTGTTCGCAAGAACCGA
EST: gi|110693522|gb|EE069829.1|EE069829
EST:     TTGACTTGGAGGACTATGTTTCTCGGCCAGATAAAATTAGTGCTGCTGAG                         ATTGCTGCTATTTGTCAAGAAGCTGGGATGCATGCTGTTCGCAAGAACCGA
genomic: TTGACTTGGAGGACTATGTTTCTCGGCCAGATAAAATTAGTGCTGCTGAGgttagcttat ... acgtatgcagATTGCTGCTATTTGTCAAGAAGCTGGGATGCATGCTGTTCGCAAGAACCGA
EST: gi|29782278|gb|CB347461.2|CB347461
EST:     TTGACTTGGAGGACTATGTTTCTCGGCCAGATAAAATTAGTGCGGCCGAG                         ATTGCTGCTATTTGTCAAGAAGCTGGGATGCATGCTGTTCGCAAGAACCGA
genomic: TTGACTTGGAGGACTATGTTTCTCGGCCAGATAAAATTAGTGCTGCTGAGgttagcttat ... acgtatgcagATTGCTGCTATTTGTCAAGAAGCTGGGATGCATGCTGTTCGCAAGAACCGA
EST: gi|71886692|gb|DT035747.1|DT035747
EST:     TTGACTTGGAGGACTATGTTTCTCGGCCAGATAAAATTAGTGCTGCTGAG                         ATTGCTGCTATTTGTCAAGAAGCTGGGATGCATGCTGTTCGCAAGAACCGA
genomic: TTGACTTGGAGGACTATGTTTCTCGGCCAGATAAAATTAGTGCTGCTGAGgttagcttat ... acgtatgcagATTGCTGCTATTTGTCAAGAAGCTGGGATGCATGCTGTTCGCAAGAACCGA
EST: gi|33407022|gb|CF212649.1|CF212649
EST:     TTGACTTGGAGGACTATGTTTCTCGGCCAGATAAAATTAGTGCTGCTGAG                         ATTGCTGCTATTTGTCAAGAAGCTGGGATGCATGCTGTTCGCAAGAACCGA
genomic: TTGACTTGGAGGACTATGTTTCTCGGCCAGATAAAATTAGTGCTGCTGAGgttagcttat ... acgtatgcagATTGCTGCTATTTGTCAAGAAGCTGGGATGCATGCTGTTCGCAAGAACCGA
EST: gi|30128579|gb|CB913918.1|CB913918
EST:     TTGACTTGGAGGACTATGTTGCTCGGCCAGATAAAATTAGTGCTGCTGAG                         ATTGCTGCTATTTGTCAAGAAGCTGGGATGCATGCTGTTCGCAAGAACCGA
genomic: TTGACTTGGAGGACTATGTTTCTCGGCCAGATAAAATTAGTGCTGCTGAGgttagcttat ... acgtatgcagATTGCTGCTATTTGTCAAGAAGCTGGGATGCATGCTGTTCGCAAGAACCGA
EST: gi|32459662|gb|CD800836.1|CD800836
EST:     TTGACTTGGAGGACTATGTTTCTCGGCCAGATAAAATTAGTGCTGCTGAG                         ATTGCTGCTATTTGTCAAGAAGCTGGGATGCATGCTGTTCGCAAGAACCGA
genomic: TTGACTTGGAGGACTATGTTTCTCGGCCAGATAAAATTAGTGCTGCTGAGgttagcttat ... acgtatgcagATTGCTGCTATTTGTCAAGAAGCTGGGATGCATGCTGTTCGCAAGAACCGA
EST: gi|30298889|gb|CB975683.1|CB975683
EST:     TTGACTTGGAGGACTATGTTTCTCGGCCAGATAAAATTAGTGCTGCTGAG                         ATTGCTGCTATTTGTCAAGAAGCTGGGATGCATGCTGTTCGCAAGAACCGA
genomic: TTGACTTGGAGGACTATGTTTCTCGGCCAGATAAAATTAGTGCTGCTGAGgttagcttat ... acgtatgcagATTGCTGCTATTTGTCAAGAAGCTGGGATGCATGCTGTTCGCAAGAACCGA
EST: gi|110413373|gb|EC979155.1|EC979155
EST:     TTGACTTGGAGGACTATGTTTCTCGGCCAGATAAAATTAGTGCTGCTGAG                         ATTGCTGCTATTTGTCAAGAAGCTGGGATGCATGCTGTTCGCAAGAACCGA
genomic: TTGACTTGGAGGACTATGTTTCTCGGCCAGATAAAATTAGTGCTGCTGAGgttagcttat ... acgtatgcagATTGCTGCTATTTGTCAAGAAGCTGGGATGCATGCTGTTCGCAAGAACCGA
EST: gi|32250054|gb|CD715873.1|CD715873
EST:     TTGACTTGGAGGACTATGTTTCTCGGCCAGATAAAATTAGTGCTGCTGAG                         ATTGCTGCTATTTGTCAAGAAGCTGGGATGCATGCTGTTCGCAAGAACCGA
genomic: TTGACTTGGAGGACTATGTTTCTCGGCCAGATAAAATTAGTGCTGCTGAGgttagcttat ... acgtatgcagATTGCTGCTATTTGTCAAGAAGCTGGGATGCATGCTGTTCGCAAGAACCGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTTTGCACTGCTAAGATGAACTTAAGCGATGAGGTTGACTTGGAGGACTATGTTTCTCGGCCAGATAAAATTAGTGCTGCTGAGgttagcttattctgtatcttatctttacagttttcttgttgtctgagtcctcaatttcaaatgtagtactagaacttatgttcactgggggaaattttgt

- - - - - - - - - - - - - - - - - - -  TTGGAG
- - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - -  GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gggaaat