1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GTAGAAACTGATATCTTAAATGACGATGGTGGGGATGGCAAGGAAGATTTGGATGgtaagaagtgtaatttttagagcctccaatagaaaatgtattacagaaataaaaactaaaaaaatatgctatgttggaaggagagtagcattctaagggcatatatatctgaaactgaaagtaaaaatttgctatgttaacattcttaaattgaattttaaagatacggttctctctacccttttag
species | Vitis vinifera |
transcript | Vv06s0004g08180.t01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: AACTGATATCTTAAATGACGATGGTGGGGATGGCAAGGAAGAATTGGATG ATCATAATGGTGAGGATGAAGAAGGAGAAGGCATTGTCCTACAACCACGGTEST: gi|34548729|gb|CF516961.1|CF516961
genomic: AACTGATATCTTAAATGACGATGGTGGGGATGGCAAGGAAGATTTGGATGgtaagaagtg ... acccttttagATCATAATGGTGAGGATGAAGAAGGAGAAGGCATTGTCCTACAACCACGGT
EST: AACTGATATCTTAAATGACGATGGTGGGGATGGCAAGGAAGAATTGGATG ATCATAATGGTGAGGATGAAGAAGGAGAAGGCATTGTCCTACAACCACGGTEST: gi|26257846|gb|CA808909.1|CA808909
genomic: AACTGATATCTTAAATGACGATGGTGGGGATGGCAAGGAAGATTTGGATGgtaagaagtg ... acccttttagATCATAATGGTGAGGATGAAGAAGGAGAAGGCATTGTCCTACAACCACGGT
EST: TGATATTCTTAAATGACGGATGGTGGGGATGGGCAAGGAAGAATTGGATG ATCATAATGGTGAGGATGAAGAAGGAGAAGGCATTGTCCTACAACCACGGTEST: gi|34548647|gb|CF516879.1|CF516879
genomic: TGATA-TCTTAAATGAC-GATGGTGGGGAT-GGCAAGGAAGATTTGGATGgtaagaagtg ... acccttttagATCATAATGGTGAGGATGAAGAAGGAGAAGGCATTGTCCTACAACCACGGT
EST: AACTGATATCTTAAATGACGATGGTGGGGATGGCAAGGAAGAATTGGATG ATCATAATGGTGAGGATGAAGAAGGAGAAGGCATTGTCCTACAACCACGGTEST: gi|110363156|gb|EC926727.1|EC926727
genomic: AACTGATATCTTAAATGACGATGGTGGGGATGGCAAGGAAGATTTGGATGgtaagaagtg ... acccttttagATCATAATGGTGAGGATGAAGAAGGAGAAGGCATTGTCCTACAACCACGGT
EST: AACTGATATCTTAAATGATGATGGTGGGGATGGCAAGGAAGATTTGGATG ATCATAATGGTGAGGATGAAGAAGGAGAAGGCATTGTCCTACAACCACGGT
genomic: AACTGATATCTTAAATGACGATGGTGGGGATGGCAAGGAAGATTTGGATGgtaagaagtg ... acccttttagATCATAATGGTGAGGATGAAGAAGGAGAAGGCATTGTCCTACAACCACGGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTAGAAACTGATATCTTAAATGACGATGGTGGGGATGGCAAGGAAGATTTGGATGgtaagaagtgtaatttttagagcctccaatagaaaatgtattacagaaataaaaactaaaaaaatatgctatgttggaaggagagtagcattctaagggcatatatatctgaaactgaaagtaaaaatttgctatgttaacattcttaaattgaattttaaagatacggttctctctacccttttag
- - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - GGAAGA