Sequence
atgc intronic sequence ATGC exonic sequenceAGACCAGGGGGTCTATTGGCATGCGAGCTTGCACGACATGCTGTTGTTCTTAAAATCGATGACTGGGTGTTTTGTCATGGTGGTCTTCTTCCTCACCATGgtaaaaatagtaccattgccatttgaatgcattgcttgtttaaacttatgtaagacgttttatctttcttgtttgaaatgcctgataggagtgttggtacttccacag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0004g07390.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G125140_T01 (Zea mays), 5'ss of exon 7
AGACCAGGGGGTCTATTGGCATGCGAGCTTGCACGACATGCTGTTGTTCTTAAAATCGATGACTGGGTGTTTTGTCATGGTGGTCTTCTTCCTCACCATGgtaaaaatagtaccattgccatttgaatgcattgcttgtttaaacttatgtaagacgttttatctttcttgtttgaaatgcctgataggagtgttggtacttccacag
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AAGCGAGGTGGTCCGCTAGCTCATGAATTGGCTCGGCATCCTGTTGTCCTCAAGATCAATGACTGGATTTTTTGTCATGGTGGCCTTCTTCCTCACCATGgtgagaccctt--cacctctccttggcatccttgttacccttggcaatttgcatacgtgatctcagtctaaaacataa-atctggttcaag-gtcagaacctgc----
upper sequence: Vv06s0004g07390.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA02G39710.1 (Glycine max), 5'ss of exon 5
AGACCAGGGGGTCTATTGGCATGCGAGCTTGCACGACATGCTGTTGTTCTTAAAATCGATGACTGGGTGTTTTGTCATGGTGGTCTTCTTCCTCACCATGgtaaaaatagtaccattgccatttgaatgcattgcttgtttaaacttatgtaagacgttttatctttcttgtttgaaatgcctgata-ggagtgttg-gtacttccacag----------------------------------------------------------
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AGGCCCGGTGGGCTTCTTGCACGTGAGCTTGCAAGGCATGCTGTTGTACTTAAGGTCAATGACTGGGTCTTCTGTCATGGTGGACTTCTTCCTCACCATGgtaaatactttgtggcatttttctcttttcatt--ttgtttaa-cttgagatggatttttttttttacttgagcagtatctactatatgtaatgctctatggttgcctgtttcaattttgttctaccttgattccaatgcttgatattattgtcttcgttttctgtag
upper sequence: Vv06s0004g07390.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA14G37780.1 (Glycine max), 5'ss of exon 5
AGACCAGGGGGTCTATTGGCATGCGAGCTTGCACGACATGCTGTTGTTCTTAAAATCGATGACTGGGTGTTTTGTCATGGTGGTCTTCTTCCTCACCATGgtaaaaatagtaccattgccatttgaatgcattgcttgtttaaacttatgtaagacgttttatctttct-tgtttgaaatgcctgataggag--tgttggtacttccacag--------------------------------------------
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AGGCCTGGTGGGCTTCTTGCACGTGAGCTTGCAAGGCATGCTGTTGTACTAAAGGTCAATGACTGGGTCTTCTGTCATGGTGGACTTCTTCCTCACCATGgtaaatattttg----tggcattttttcttttccttttgtttaacttgagatggatttttactcgagcaatatcaactatatataatagtacctttttcgaatttgttctaccttgattacaaatgcctgatattattttcttcgttttctgtagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110371319|gb|EC935252.1|EC935252EST: TAAAATCGATGACTGGGTGTTTTGTCATGGTGGTCTTCTTCCTCACCATG TTGCATATGGCATAGAGAGAATGAACAGGGAAGTATCTCATTGGATGAGAG
genomic: TAAAATCGATGACTGGGTGTTTTGTCATGGTGGTCTTCTTCCTCACCATGgtaaaaatag ... acttccacagTTGCATATGGCATAGAGAGAATGAACAGGGAAGTATCTCATTGGATGAGAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGACCAGGGGGTCTATTGGCATGCGAGCTTGCACGACATGCTGTTGTTCTTAAAATCGATGACTGGGTGTTTTGTCATGGTGGTCTTCTTCCTCACCATGgtaaaaatagtaccattgccatttgaatgcattgcttgtttaaacttatgtaagacgttttatctttcttgtttgaaatgcctgataggagtgttggtacttccacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG