1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
AATTGCTCCTTAGTGCAAATGATATATTGGATGAATCCATTAGCTGGGAAGGAGTAGTATCTCTGAAGTCTCTAACAGTTTTATCTCTGAGCCAAAACTAgtaagtgtttctgtccttcatgaccctgacttggttttgttcatttttttctctgaagtgcatatcagaaatcatgttgccttctgtgatgaacttgtta...
species | Vitis vinifera |
transcript | Vv06s0004g07050.t01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GGAGTAGTATCTCTGAAGTCTCTAACAGTTCTGTCTCTGAGCCAAAACTA TTTAACAATGTTGCCTTCTGCACTGGGTGCTCTGACTTCTCTAAGGCAACTEST: gi|22012587|gb|BQ797621.1|BQ797621
genomic: GGAGTAGTATCTCTGAAGTCTCTAACAGTTTTATCTCTGAGCCAAAACTAgtaagtgttt ... atttatgcagTTTAACAATGTTGCCTTCTGCACTGGGTGCTCTGACTTCTCTAAGGCAACT
EST: GGAGTAGTATCTCTGAAGTCTCTAACAGTTCTGTCTCTGAGCCAAAACTA TTTAACAATGTTGCCTTCTGCACTGGGTGCTCTGACTTCTCTAAGGCAACTEST: gi|110375491|gb|EC940480.1|EC940480
genomic: GGAGTAGTATCTCTGAAGTCTCTAACAGTTTTATCTCTGAGCCAAAACTAgtaagtgttt ... atttatgcagTTTAACAATGTTGCCTTCTGCACTGGGTGCTCTGACTTCTCTAAGGCAACT
EST: GGAGTAGTATCTCTGAAGTCTCTAACAGTTCTGTCTCTGAGCCAAAACTA TTTAACAATGTTGCCTTCTGCACTGGGTGCTCTGACTTCTCTAAGGCAACTEST: gi|110391067|gb|EC956021.1|EC956021
genomic: GGAGTAGTATCTCTGAAGTCTCTAACAGTTTTATCTCTGAGCCAAAACTAgtaagtgttt ... atttatgcagTTTAACAATGTTGCCTTCTGCACTGGGTGCTCTGACTTCTCTAAGGCAACT
EST: GGAGTAGTATCTCTGAAGTCTCTAACAGTTCTGTCTCTGAGCCAAAACTA TTTAACAATGTTGCCTTCTGCACTGGGTGCTCTGACTTCTCTAAGGCAACT
genomic: GGAGTAGTATCTCTGAAGTCTCTAACAGTTTTATCTCTGAGCCAAAACTAgtaagtgttt ... atttatgcagTTTAACAATGTTGCCTTCTGCACTGGGTGCTCTGACTTCTCTAAGGCAACT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AATTGCTCCTTAGTGCAAATGATATATTGGATGAATCCATTAGCTGGGAAGGAGTAGTATCTCTGAAGTCTCTAACAGTTTTATCTCTGAGCCAAAACTAgtaagtgtttctgtccttcatgaccctgacttggttttgttcatttttttctctgaagtgcatatcagaaatcatgttgccttctgtgatgaacttgtta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaatca